Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12120 478 / 1e-169 FAD2 fatty acid desaturase 2 (.1.2) AT2G29980 196 / 5e-59 AtFAD3, FAD3 fatty acid desaturase 3 (.1.2) AT3G11170 192 / 5e-57 AtFAD7, FADD, FAD7 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) AT5G05580 180 / 2e-52 AtFAD8, SH1, FAD8 fatty acid desaturase 8 (.1.2) AT4G30950 71 / 4e-13 FADC, SFD4, FAD6 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004177 [exp] 712 / 0 AT3G12120 508 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021045 [exp] 617 / 0 AT3G12120 500 / 2e-178 fatty acid desaturase 2 (.1.2) Lus10021047 [exp] 561 / 0 AT3G12120 502 / 9e-179 fatty acid desaturase 2 (.1.2) Lus10004181 [exp] 547 / 0 AT3G12120 494 / 1e-175 fatty acid desaturase 2 (.1.2) Lus10004180 [exp] 545 / 0 AT3G12120 498 / 4e-177 fatty acid desaturase 2 (.1.2) Lus10021046 [exp] 544 / 0 AT3G12120 489 / 5e-174 fatty acid desaturase 2 (.1.2) Lus10004176 [exp] 533 / 0 AT3G12120 519 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021050 [exp] 530 / 0 AT3G12120 521 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004175 [exp] 510 / 0 AT3G12120 635 / 0.0 fatty acid desaturase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G192000 [exp] 499 / 1e-177 AT3G12120 629 / 0.0 fatty acid desaturase 2 (.1.2) Potri.016G046200 [exp] 498 / 3e-177 AT3G12120 624 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012401 [exp] 474 / 6e-167 AT3G12120 571 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012700 [exp] 453 / 2e-159 AT3G12120 553 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012500 [exp] 394 / 7e-137 AT3G12120 480 / 3e-171 fatty acid desaturase 2 (.1.2) Potri.008G069600 [exp] 197 / 1e-58 AT5G05580 689 / 0.0 fatty acid desaturase 8 (.1.2) Potri.001G252900 [exp] 194 / 3e-58 AT2G29980 539 / 0.0 fatty acid desaturase 3 (.1.2) Potri.010G187800 [exp] 194 / 2e-57 AT5G05580 683 / 0.0 fatty acid desaturase 8 (.1.2) Potri.016G117500 [exp] 193 / 3e-57 AT5G05580 592 / 0.0 fatty acid desaturase 8 (.1.2) Potri.006G101500 [exp] 191 / 3e-56 AT5G05580 632 / 0.0 fatty acid desaturase 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase PF11960 [flax] [poplar] DUF3474 Domain of unknown function (DUF3474)
Representative CDS sequence Show only first row Show all	>Lus10021049 pacid=23182425 polypeptide=Lus10021049 locus=Lus10021049.g ID=Lus10021049.BGIv1.0 annot-version=v1.0 ATGGTATCCAATACCACCATAAAGCGAACACCGACCTCAAAACCGCCGTTCACCCTCTCCGACGTCAAGAAAGCAATACCACCGCACTGCTTCCAAAGAT CCCTCCTCAAATCCTTCACCTACCTAGCCTACGATCTCACCGTCATCACAATCCTCTACCACATCGCCACGTCATACTTCCACCTCCTCCCCAACCCTCT CTCCTACGTGGCGTGGCCGCTCTACTGGGCCGCCCAGGGGTCACACTTCATCGCTTGGGCCGCTCAGGGGTCCCACTTCATCGCCGTGTGGGTCATCGCC CACGAGTGCGGCCAACACGCCTTCAGCGACTACCAGTGGCTAGACGACGCCGTTGGGTTCGTCCTCCACTCCCTCCTCTTAGCTCCTTACTTCTCCTGGA AGCACAGCCACCGCCGTCACCACGCCAACGCCGCCTCCATCGAGCGCGACGAGAATTACATCCCGAAAAAGAAGGACGAAGTCAACTGGCATTTTAAATA CCTCGACAACCCTCCCGGACACGTGTTCTATATATTCTTCACTCTCACCCTCGGATGGCCGCTCTACTTGCTGGTCAACATCTCCGGCAGGAAATACGAC GACGGATTCGCCAGCCATTTGTATCCTTTCTCCCCTATCTACAACGACCGCGAGAGATTCGGGATAGTCCTCTCCGTCGCCGGGATGCTCGCCACGTGGT TCGGTCTTTATAAACTCGCGATGGTCAACGGGTTCGGTTGGGTTGTTTGCGTGTACGGGGTGCCTCTCATTCTCCAGAATGCGATGTTGATTACCATCAC TTACTTGCACCACACGCATCTCAACTTGCCCCACTACGACTCGTCGGAGTGGGACTGGATGAGGGGTGCACTCGCGACTGTGGATAGGGATTACGGAATT TTGAATAAGGTGATGCATAATATTACGGATACCCACGTGGCGCACCATCTGTTCTCGATGATTCCTCATTATCATGCGATGGAGGCTACAAATGCGATAA AGCCGGTTCTTGGGGAGTACTACCAAGTTGATACTACGCCGTTTTTGAAGGCGTTGTGGAGAGAGACTAAGGATTGTGTTTATGTTGAGGCGGATGATGA GGGATCTGATCGGGAGAAGAAAGGAGGGGTGTTTTGGTTCAAAACCAAGCTGTAA
AA sequence Show only first row Show all	>Lus10021049 pacid=23182425 polypeptide=Lus10021049 locus=Lus10021049.g ID=Lus10021049.BGIv1.0 annot-version=v1.0 MVSNTTIKRTPTSKPPFTLSDVKKAIPPHCFQRSLLKSFTYLAYDLTVITILYHIATSYFHLLPNPLSYVAWPLYWAAQGSHFIAWAAQGSHFIAVWVIA HECGQHAFSDYQWLDDAVGFVLHSLLLAPYFSWKHSHRRHHANAASIERDENYIPKKKDEVNWHFKYLDNPPGHVFYIFFTLTLGWPLYLLVNISGRKYD DGFASHLYPFSPIYNDRERFGIVLSVAGMLATWFGLYKLAMVNGFGWVVCVYGVPLILQNAMLITITYLHHTHLNLPHYDSSEWDWMRGALATVDRDYGI LNKVMHNITDTHVAHHLFSMIPHYHAMEATNAIKPVLGEYYQVDTTPFLKALWRETKDCVYVEADDEGSDREKKGGVFWFKTKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021049 [exp]	0	1
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021048 [exp]	1.0	0.9379
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021045 [exp]	11.1	0.9118
					Lus10014855 [exp]	12.1	0.8186
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Lus10041440 [exp]	16.9	0.7968
AT1G29970		RPL18AA	60S ribosomal protein L18A-1 (...		Lus10005572 [exp]	19.4	0.8296
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10010509 [exp]	20.6	0.8798
AT3G56230			BTB/POZ domain-containing prot...		Lus10010216 [exp]	22.4	0.8758
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Lus10005885 [exp]	22.8	0.8483
AT3G08030			Protein of unknown function, D...		Lus10029503 [exp]	23.2	0.8583
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10006317 [exp]	26.5	0.8702

Compare expression of checked genes

Lus10021049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.