Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12120 521 / 0 FAD2 fatty acid desaturase 2 (.1.2) AT2G29980 228 / 3e-71 AtFAD3, FAD3 fatty acid desaturase 3 (.1.2) AT3G11170 222 / 2e-68 AtFAD7, FADD, FAD7 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) AT5G05580 217 / 2e-66 AtFAD8, SH1, FAD8 fatty acid desaturase 8 (.1.2) AT4G30950 94 / 6e-21 FADC, SFD4, FAD6 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004176 [exp] 731 / 0 AT3G12120 519 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004175 [exp] 575 / 0 AT3G12120 635 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021051 [exp] 574 / 0 AT3G12120 634 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004177 [exp] 566 / 0 AT3G12120 508 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021045 [exp] 557 / 0 AT3G12120 500 / 2e-178 fatty acid desaturase 2 (.1.2) Lus10021049 [exp] 556 / 0 AT3G12120 503 / 4e-179 fatty acid desaturase 2 (.1.2) Lus10021047 [exp] 545 / 0 AT3G12120 502 / 9e-179 fatty acid desaturase 2 (.1.2) Lus10004178 [exp] 533 / 0 AT3G12120 532 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004180 [exp] 529 / 0 AT3G12120 498 / 4e-177 fatty acid desaturase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G046200 [exp] 545 / 0 AT3G12120 624 / 0.0 fatty acid desaturase 2 (.1.2) Potri.006G192000 [exp] 541 / 0 AT3G12120 629 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012401 [exp] 536 / 0 AT3G12120 571 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012700 [exp] 512 / 0 AT3G12120 553 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012500 [exp] 444 / 1e-156 AT3G12120 480 / 3e-171 fatty acid desaturase 2 (.1.2) Potri.001G252900 [exp] 231 / 1e-72 AT2G29980 539 / 0.0 fatty acid desaturase 3 (.1.2) Potri.016G117500 [exp] 229 / 5e-71 AT5G05580 592 / 0.0 fatty acid desaturase 8 (.1.2) Potri.006G101500 [exp] 228 / 2e-70 AT5G05580 632 / 0.0 fatty acid desaturase 8 (.1.2) Potri.008G069600 [exp] 224 / 3e-69 AT5G05580 689 / 0.0 fatty acid desaturase 8 (.1.2) Potri.010G187800 [exp] 223 / 2e-68 AT5G05580 683 / 0.0 fatty acid desaturase 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase PF11960 [flax] [poplar] DUF3474 Domain of unknown function (DUF3474)
Representative CDS sequence Show only first row Show all	>Lus10021050 pacid=23182404 polypeptide=Lus10021050 locus=Lus10021050.g ID=Lus10021050.BGIv1.0 annot-version=v1.0 ATGTTCTCATCCTCTGCAACTAAAATGCCGGCGCCGCCTTCATCATCCAACACGACCATGAAGCGATCGCCTCACTCAAAGCCGCCGTTCACCGTCTCCG ACGTCAAGAAAGCCATTCCACCACACTGCTTCCAAAGGTCCCTCCTCCGATCATTCTCCTACCTAACCTACGACCTCACCATCATCACAATCCTCTACCA AGTCGCCACCACTTACTTCCACCTCCTCCCGACACCTCTCTCATCCTACGTGGCATGGCCGGCCTACTGGGCCGGCCAAGGCTGCTTCTTCGTCGCTGTA TGGATGGTGGCCCACGAGTGTGGCCATCACGCCTTCAGCGACCAGCACTGGCTGGAAGACTCGGTCGGATTCATCCTCCACTCAGCCCTCCTTTCACCTT ACTTCTCATGGAAGCACAGCCACCGTCGCCACCATGCCAACACGAGCTCCCTCGAACGTGACGAGGTGTTCGTCCCTAAACCCAAGTCCAAGCTGAGCTG GCACTTCAAGTTCTTCAACAACCCGCCTGGCCGCGTCCTGCAGTTGGCATTTGCTCTGCTTCTTGGATGGCCTCTCTATTTGGCGATCAACATCGCCGGA AGGCCGTACGAGAAATTCGCTAGCCACTTCGATCCGAGAAGCCCTATCTACAACGATCGAGAGCGGATCGAGATATTCGCATCCGATGTTGGCGTGCTCT GCATGTGGTTCGCGCTGTATAAACTTGCTCTAGTGAACGGAGTTGGTTGGGTTGTTTGTGTGTACGGGATCCCGCTGTTGGTGATGAATGGATGGGTCGT TACGATCACTTACTTGCATCACACGCATATAGCGTTGCCGCGGTATGATTCGTCCGAATGGGATTGGTTGAGGGGTGCATTGGCGACTGTGGATAGGGAC TATGGTGTTTTGAACAAGGTGTTTCATAACATCACGGATACTCATGTGGCGCACCATCTGTTTTCGGCGATGCCTCATTACCATGCGGCGGAAGCGACCG AGGCGATCAAGCCCGTTTTGGGCGAGTATTATCGGTGTGACCGGACTCCTATTATCAAGGCGTTATGGAGGGAGTTTAAGCACTGTATTTATGTCGAGTC AGATGAGGATAAAGGCGTGTTTTGGTTCAATGACAAGTTGTAA
AA sequence Show only first row Show all	>Lus10021050 pacid=23182404 polypeptide=Lus10021050 locus=Lus10021050.g ID=Lus10021050.BGIv1.0 annot-version=v1.0 MFSSSATKMPAPPSSSNTTMKRSPHSKPPFTVSDVKKAIPPHCFQRSLLRSFSYLTYDLTIITILYQVATTYFHLLPTPLSSYVAWPAYWAGQGCFFVAV WMVAHECGHHAFSDQHWLEDSVGFILHSALLSPYFSWKHSHRRHHANTSSLERDEVFVPKPKSKLSWHFKFFNNPPGRVLQLAFALLLGWPLYLAINIAG RPYEKFASHFDPRSPIYNDRERIEIFASDVGVLCMWFALYKLALVNGVGWVVCVYGIPLLVMNGWVVTITYLHHTHIALPRYDSSEWDWLRGALATVDRD YGVLNKVFHNITDTHVAHHLFSAMPHYHAAEATEAIKPVLGEYYRCDRTPIIKALWREFKHCIYVESDEDKGVFWFNDKL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021050 [exp]	0	1
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10033524 [exp]	5.7	0.8564
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10011858 [exp]	10.2	0.8425
AT1G52330			Late embryogenesis abundant (L...		Lus10011458 [exp]	11.1	0.8426
AT5G13420			Aldolase-type TIM barrel famil...		Lus10043136 [exp]	14.6	0.8416
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10022794 [exp]	18.0	0.8213
AT4G27270			Quinone reductase family prote...		Lus10007612 [exp]	20.5	0.8193
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10019811 [exp]	21.0	0.8193
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020847 [exp]	25.0	0.8169
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10014074 [exp]	26.8	0.8131
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10005390 [exp]	30.6	0.8008

Compare expression of checked genes

Lus10021050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.