Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12120 608 / 0 FAD2 fatty acid desaturase 2 (.1.2) AT2G29980 200 / 1e-60 AtFAD3, FAD3 fatty acid desaturase 3 (.1.2) AT3G11170 201 / 3e-60 AtFAD7, FADD, FAD7 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) AT5G05580 192 / 5e-57 AtFAD8, SH1, FAD8 fatty acid desaturase 8 (.1.2) AT4G30950 78 / 1e-15 FADC, SFD4, FAD6 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004175 [exp] 767 / 0 AT3G12120 635 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004176 [exp] 550 / 0 AT3G12120 519 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021050 [exp] 547 / 0 AT3G12120 521 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004178 [exp] 543 / 0 AT3G12120 532 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021045 [exp] 521 / 0 AT3G12120 500 / 2e-178 fatty acid desaturase 2 (.1.2) Lus10004177 [exp] 519 / 0 AT3G12120 508 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021049 [exp] 509 / 0 AT3G12120 503 / 4e-179 fatty acid desaturase 2 (.1.2) Lus10021047 [exp] 507 / 0 AT3G12120 502 / 9e-179 fatty acid desaturase 2 (.1.2) Lus10004180 [exp] 497 / 6e-177 AT3G12120 498 / 4e-177 fatty acid desaturase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G192000 [exp] 639 / 0 AT3G12120 629 / 0.0 fatty acid desaturase 2 (.1.2) Potri.016G046200 [exp] 639 / 0 AT3G12120 624 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012401 [exp] 588 / 0 AT3G12120 571 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012700 [exp] 556 / 0 AT3G12120 553 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012500 [exp] 518 / 0 AT3G12120 480 / 3e-171 fatty acid desaturase 2 (.1.2) Potri.001G252900 [exp] 204 / 3e-62 AT2G29980 539 / 0.0 fatty acid desaturase 3 (.1.2) Potri.010G187800 [exp] 204 / 2e-61 AT5G05580 683 / 0.0 fatty acid desaturase 8 (.1.2) Potri.016G117500 [exp] 201 / 4e-60 AT5G05580 592 / 0.0 fatty acid desaturase 8 (.1.2) Potri.006G101500 [exp] 199 / 1e-59 AT5G05580 632 / 0.0 fatty acid desaturase 8 (.1.2) Potri.008G069600 [exp] 197 / 9e-59 AT5G05580 689 / 0.0 fatty acid desaturase 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase PF11960 [flax] [poplar] DUF3474 Domain of unknown function (DUF3474)
Representative CDS sequence Show only first row Show all	>Lus10021051 pacid=23182367 polypeptide=Lus10021051 locus=Lus10021051.g ID=Lus10021051.BGIv1.0 annot-version=v1.0 ATGGGTGCTGGCGGAAGAATGGCCGTGCCTCCATCGAACAAGGCGGACTCCGAAACCTTTAAGCGGTCTCCTTACTCAAAACCTCCCTTCACTCTTGGTG AGATCAAGAAAGCCGTCCCTCCACACTGCTTCAAAAGGTCCATCCCCCGCTCGTTCTCCTACGTGGCTTATGACCTCACCATAGCCGCCATCTTCTACTA CATCGCCACCACTTACATCCACCTCCTCCCCAATCCTCTCTCCTACGTGGCGTGGCCGATCTACTGGGCCTGCCAAGGCTGCGTCCTCACTGGTGTCTGG GTCCTAGCCCACGAATGCGGTCACCATGCCTTCAGCGACTACCAATGGCTCGACGACTTGGTCGGCTTTGTCCTCCACTCATGCCTCATGGTACCCTACT TCTCGTGGAAGCACAGCCACCGTCGCCACCACTCCAATACTGGGTCCCTCGAACGAGACGAGGTTTTTGTCCCCAAGCAGAAATCAGCCATTGGCTGGCA CTCAAAGTACCTCAACAACCCACCTGGCCGTGTGCTCACACTTGCAGTCACTCTCACTCTCGGCTGGCCTTTGTACTTGGCATTCAACGTCTCTGGAAGG CCGTACGACCGGTTCGCCTGCCATTACGATCCTAAATCCCCCATCTACAACGACCGCGAGCGAACGGAGATATTCTTCTCCGATGCTGGCATCCTTGCTG TGAGCTTTGCGCTCTACAAGCTTGCTGTCGCCAAGGGACTGGCTTGGGTGGTTTGTGTCTACGGAGTTCCACTCCTTGTAGTGAATGGATTCCTTGTCTT GATCACTTTCTTGCAGCACACCCACCCATCATTGCCGCACTACAAATCCTCCGAATGGGACTGGCTGAGAGGTGCTCTGGCGACCATGGACAGAGACTAC GGGTTTCTGAACACGGTGTTCCATAACATCACGGATACCCACGTGGCGCACCACCTGTTCTCGACGATGCCTCATTACCATGCAATGGAAGCTACAAAGG CGATCAAGCCGGTATTGGGAGAGTACTACCAATTCGACGGGACTCCATTCATCAAGGCGATGTGGAGGGAGGCTAAGGAGTGTGTTTATGTCGAGCCCGA CGAAGGTGACCAGAACAAAGGCGTGTTCTGGTACAACAACAAGCTGTGA
AA sequence Show only first row Show all	>Lus10021051 pacid=23182367 polypeptide=Lus10021051 locus=Lus10021051.g ID=Lus10021051.BGIv1.0 annot-version=v1.0 MGAGGRMAVPPSNKADSETFKRSPYSKPPFTLGEIKKAVPPHCFKRSIPRSFSYVAYDLTIAAIFYYIATTYIHLLPNPLSYVAWPIYWACQGCVLTGVW VLAHECGHHAFSDYQWLDDLVGFVLHSCLMVPYFSWKHSHRRHHSNTGSLERDEVFVPKQKSAIGWHSKYLNNPPGRVLTLAVTLTLGWPLYLAFNVSGR PYDRFACHYDPKSPIYNDRERTEIFFSDAGILAVSFALYKLAVAKGLAWVVCVYGVPLLVVNGFLVLITFLQHTHPSLPHYKSSEWDWLRGALATMDRDY GFLNTVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPVLGEYYQFDGTPFIKAMWREAKECVYVEPDEGDQNKGVFWYNNKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021051 [exp]	0	1
AT1G72330		ALAAT2	alanine aminotransferase 2 (.1...		Lus10003935 [exp]	1.0	0.9737
AT5G20600			unknown protein		Lus10027609 [exp]	3.0	0.9606
AT5G55410			Bifunctional inhibitor/lipid-t...		Lus10032575 [exp]	3.5	0.9689
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10006032 [exp]	4.2	0.9602
AT3G62120			Class II aaRS and biotin synth...		Lus10016281 [exp]	4.9	0.9563
AT5G25940			early nodulin-related (.1)		Lus10019434 [exp]	5.3	0.9566
AT5G51830			pfkB-like carbohydrate kinase ...		Lus10027401 [exp]	5.5	0.9602
AT2G11890			adenylate cyclases (.1.2)		Lus10008820 [exp]	5.5	0.9527
AT1G10580			Transducin/WD40 repeat-like su...		Lus10030620 [exp]	7.1	0.9557
AT5G08680			ATP synthase alpha/beta family...		Lus10034631 [exp]	7.7	0.9603

Compare expression of checked genes

Lus10021051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.