Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G66654 240 / 4e-80 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT2G47320 183 / 6e-58 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G44600 98 / 3e-23 AtCYP71, CYP71 cyclophilin 71, cyclophilin71 (.1) AT2G36130 90 / 2e-22 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G01940 73 / 5e-16 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G67530 73 / 1e-14 ATPUB49 plant U-box 49 (.1) AT2G15790 70 / 1e-13 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) AT5G13120 67 / 6e-13 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT2G16600 63 / 3e-12 ROC3 rotamase CYP 3 (.1.2) AT4G33060 65 / 6e-12 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004174 [exp] 394 / 1e-140 AT3G66654 272 / 8e-93 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10016265 [exp] 326 / 5e-114 AT3G66654 260 / 4e-88 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10012005 [exp] 310 / 3e-107 AT3G66654 259 / 5e-87 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10020573 [exp] 100 / 3e-24 AT3G44600 1115 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10006271 [exp] 100 / 4e-24 AT3G44600 1110 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10017010 [exp] 78 / 2e-17 AT2G36130 278 / 4e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10021335 [exp] 77 / 3e-17 AT2G36130 286 / 1e-100 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10020992 [exp] 78 / 2e-16 AT2G15790 598 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10023860 [exp] 77 / 3e-16 AT2G15790 599 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G105800 [exp] 263 / 2e-89 AT3G66654 306 / 2e-106 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.010G144500 [exp] 249 / 1e-83 AT3G66654 311 / 2e-108 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.002G194250 [exp] 120 / 2e-33 AT2G47320 125 / 1e-35 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.016G075600 [exp] 91 / 8e-23 AT2G36130 278 / 3e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G146400 [exp] 96 / 1e-22 AT3G44600 1095 / 0.0 cyclophilin 71, cyclophilin71 (.1) Potri.002G149700 [exp] 71 / 4e-15 AT1G01940 293 / 3e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.003G167700 [exp] 70 / 4e-14 AT5G13120 277 / 5e-94 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.001G060200 [exp] 68 / 1e-13 AT5G13120 297 / 7e-102 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.005G148900 [exp] 69 / 2e-13 AT5G67530 806 / 0.0 plant U-box 49 (.1) Potri.004G144300 [exp] 69 / 2e-13 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10021052 pacid=23182444 polypeptide=Lus10021052 locus=Lus10021052.g ID=Lus10021052.BGIv1.0 annot-version=v1.0 ATGGCGAGGATCAAACCTCAAGCTCTGCTGCAGCAGAGCAAGAAGAAGAAACAACCGAGCCGGATAAGCGCCACGACTATTCTCTTCGGCGGCTTGATCG TCCTTCTAGCTCTGTTCTTCCTCTACTCCACCTACACGCACCGCTCCATAAGGTCTAGCATCCAGAGAAGTAGTTCTAACTCGGGATTTGAGGATGGCAG TATGATGTCTGGTTTGAAGAAATCCGACGTCCCTGGATACGTTATCTTTACGACATCGAAAGGACCTGTAACTGTGGAACTCTACAAGGATAGCTCTCCT GAAATTGTTGACAAGTTCATTGACTTATGCCAAAAGGGGCATTTCAAGGGGATGCAATTCGTTCGTGTGATAAAGCATTACGTGATTCAAGCAGGGAGCA CCGATAATCTGGGAAATACAGAGGATTGGACTGTGAAAGGGAAGCATCATGGGCAGCTTCATGCAAGCATGAAACATGAGGCTTTCATGGTTGGAACTTC AAAGGGAAAACAAGATGACAAAGGATTTGATCTGTTCATCACAACTGCGCCAATCCCTGATCTAAGCGAGAAGCTGGTGGTTTTCGGACGGGTCGTTAAG GGAGAAGATGTCGTTCAGGAAATCGAAGAGGTGGATACGGATGAACACTATCGGCCGAAAAGTCAAATAGGGATCATCAGTGTCACTCTGAAACAGAAGG CTTAA
AA sequence Show only first row Show all	>Lus10021052 pacid=23182444 polypeptide=Lus10021052 locus=Lus10021052.g ID=Lus10021052.BGIv1.0 annot-version=v1.0 MARIKPQALLQQSKKKKQPSRISATTILFGGLIVLLALFFLYSTYTHRSIRSSIQRSSSNSGFEDGSMMSGLKKSDVPGYVIFTTSKGPVTVELYKDSSP EIVDKFIDLCQKGHFKGMQFVRVIKHYVIQAGSTDNLGNTEDWTVKGKHHGQLHASMKHEAFMVGTSKGKQDDKGFDLFITTAPIPDLSEKLVVFGRVVK GEDVVQEIEEVDTDEHYRPKSQIGIISVTLKQKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10021052 [exp]	0	1
AT2G30440		Plsp2B, TPP	plastidic type I signal peptid...		Lus10011671 [exp]	5.5	0.8410
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10032705 [exp]	7.1	0.8432
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10028347 [exp]	7.3	0.8209
AT1G04960			Protein of unknown function (D...		Lus10014626 [exp]	15.2	0.8167
AT4G08230			glycine-rich protein (.1.2)		Lus10024100 [exp]	16.2	0.8158
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10011064 [exp]	17.5	0.8386
AT5G35732			unknown protein		Lus10002270 [exp]	22.2	0.7643
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10021561 [exp]	23.1	0.7996
AT3G08890			Protein of unknown function, D...		Lus10012232 [exp]	26.6	0.8088
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10037992 [exp]	27.5	0.8251

Compare expression of checked genes

Lus10021052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.