Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02370 494 / 4e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01990 460 / 2e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G60770 333 / 9e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02150 278 / 2e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 270 / 5e-84 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21705 263 / 8e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20710 235 / 2e-71 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G27460 232 / 4e-70 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09450 175 / 2e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G28020 150 / 3e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004173 [exp] 716 / 0 AT1G02370 419 / 1e-143 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013047 [exp] 340 / 2e-111 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042574 [exp] 267 / 7e-83 AT4G02820 565 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005855 [exp] 261 / 5e-81 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009787 [exp] 261 / 2e-80 AT1G02150 600 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001213 [exp] 257 / 1e-79 AT4G21705 500 / 2e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024781 [exp] 253 / 3e-77 AT1G02150 599 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008724 [exp] 239 / 3e-72 AT5G27460 492 / 6e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022033 [exp] 230 / 5e-70 AT4G02820 468 / 9e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G119000 [exp] 560 / 0 AT1G02370 456 / 1e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G194400 [exp] 541 / 0 AT1G02370 466 / 2e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G079600 [exp] 360 / 3e-119 AT1G60770 701 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G157400 [exp] 348 / 1e-114 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G050300 [exp] 295 / 2e-93 AT1G02150 698 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G139400 [exp] 292 / 1e-92 AT1G02150 714 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G051500 [exp] 273 / 9e-86 AT4G21705 605 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G208900 [exp] 273 / 2e-85 AT4G02820 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G042500 [exp] 269 / 4e-84 AT4G21705 608 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G120900 [exp] 255 / 9e-79 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10021053 pacid=23182371 polypeptide=Lus10021053 locus=Lus10021053.g ID=Lus10021053.BGIv1.0 annot-version=v1.0 ATGTGGAGAAGCGCAGCTCGTCTGATCGGAAATGGCAGATGCCCCCGGAGGCAGCTGTCAACAGCGACAGAGGCGTCGGCCTCAGCTCCGGATCCTTCGT ATAAGGAACAAAGATCATCTGGAAATCCGCTGCGGCTGTACCGGAGATTGTCGGCGCTCGGAGCTACCGGAGGGACGGTGGACAAGGTTTTGAATGACTA CGTGATGGACGGCATGTCCATCAGGAAAGTCGAGCTTATGCGCTGCGTCAAAGAGCTCCGTAAGTACGGCCGCTTCAACCATGGCCTCGAGATAATGGAG TGGATGGAGAAGAGAGGAATAAACCTCGGCCATGGAGATTTAGCGGTGCGCCTGGATCTCATATGTAAAACCAAAGGGATAACGGAGGCCGAAAATTACT TCAACGGGCTGGTTCCGTCGGCGAAGAATCCGGCTACGTACGGATCTCTACTGAACTCCTACTGCAAAAAGCTGGATTCGGAGAAGGCGTTGCAGCTCTT CCAGAAAATGGACAAATTGAAGTTCTTTCGAAACTCGTTACCTTTCAACAATCTGATGTCTATGTACATGAGGTTGGGCCAGCAGGAGAAGGTGCCCGAA CTCGTGAGCCAGATGAAGCAGATGAATCTCCCTCCCTGCACGTTTACTTACAATATCTGGATTCAGAGCCTCGGTCATATGAGAGATTTCGAAGGAATCA AGAAGGTACTGGAAGAGATGAGAAACGACGTCAACTTCGGTAACAATTTCAACTGGACTACTTACAGCAACTTGGCAGCAGTCTACACCAGTGCTGGAGA ATTCGAGAGGGCGAAATTGGCTCTCAAGATGATGGAGGAACGGATCGATAGTCACGACCGGAACGCATATCATTTCCTGCTAACTTTGTACGGCGGGATC GCCGATCTGGAAGAAGTCCATCGCGTGTGGGGGTGCCTGAAGGCGAAGTTCAATCAGGTAACGAACGCGAGTTACCTCGTGATGCTTCAAGCCCTGGCGA GGTTAAAAGATGTCGAGGGCATATCTAAGGTGTTCGAAGAGTGGGAATCGGTCTGCACCAGTTACGACATGAGGGTGGCGAACGTTGCCATAAGGGTGTA CCTGGAGAAGGGCATGTACAATGAAGCCGAGGCAGTCTTTGATGGCGCAATGGAGAGGACTCCCGGACCGTACTTCAAGACCCGGGAGATGCTTATGGTC TCGTTGCTGAAGAGGCGCCAGCTGGAACCGGCGTTGAAGCAGATGAAGGCGGCTTTTACTGAGGTTGGGCAGAACGAGAAGGGGCATGAGAAGGAGTGGC GGCCGAGCGCGGAAATTGTGAATGCGTTCTTCGGTTATTTCGAGGAAGAGAAAGATGTCGAGGGAGCTGAGAAGATGTGGAAGATTCTGAAGTGTATAAA CCGGTGCGACTCGACTGTCTATCGTCTATTGATGAAAACTTACATAGCTGCTGGGAAGTCGGCTGTCGATATGCGCACGAGGCTGGCTGAAGATGCCGTC GAAGTGGACGAGGAGATTCAGAGGTTGCTAGATGTTGTATGCCCTGAATAA
AA sequence Show only first row Show all	>Lus10021053 pacid=23182371 polypeptide=Lus10021053 locus=Lus10021053.g ID=Lus10021053.BGIv1.0 annot-version=v1.0 MWRSAARLIGNGRCPRRQLSTATEASASAPDPSYKEQRSSGNPLRLYRRLSALGATGGTVDKVLNDYVMDGMSIRKVELMRCVKELRKYGRFNHGLEIME WMEKRGINLGHGDLAVRLDLICKTKGITEAENYFNGLVPSAKNPATYGSLLNSYCKKLDSEKALQLFQKMDKLKFFRNSLPFNNLMSMYMRLGQQEKVPE LVSQMKQMNLPPCTFTYNIWIQSLGHMRDFEGIKKVLEEMRNDVNFGNNFNWTTYSNLAAVYTSAGEFERAKLALKMMEERIDSHDRNAYHFLLTLYGGI ADLEEVHRVWGCLKAKFNQVTNASYLVMLQALARLKDVEGISKVFEEWESVCTSYDMRVANVAIRVYLEKGMYNEAEAVFDGAMERTPGPYFKTREMLMV SLLKRRQLEPALKQMKAAFTEVGQNEKGHEKEWRPSAEIVNAFFGYFEEEKDVEGAEKMWKILKCINRCDSTVYRLLMKTYIAAGKSAVDMRTRLAEDAV EVDEEIQRLLDVVCPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02370			Tetratricopeptide repeat (TPR)...		Lus10021053 [exp]	0	1
AT4G36680			Tetratricopeptide repeat (TPR)...		Lus10024025 [exp]	2.8	0.8655
AT5G49300	GATA	GATA16	GATA transcription factor 16 (...		Lus10010027 [exp]	3.2	0.8425
AT1G55890			Tetratricopeptide repeat (TPR)...		Lus10020073 [exp]	3.3	0.8712
AT2G15910			CSL zinc finger domain-contain...		Lus10023841 [exp]	3.6	0.8372
AT5G23040		CDF1	CELL GROWTH DEFECT FACTOR 1, P...		Lus10000868 [exp]	5.0	0.8486
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10018394 [exp]	6.5	0.8649
AT5G23040		CDF1	CELL GROWTH DEFECT FACTOR 1, P...		Lus10009608 [exp]	6.9	0.8378
AT5G62300			Ribosomal protein S10p/S20e fa...		Lus10031705 [exp]	7.2	0.8102
AT1G62260		MEF9	mitochondrial editing factor 9...		Lus10012514 [exp]	7.9	0.8444
AT1G27310		NTF2A	nuclear transport factor 2A (....		Lus10035202 [exp]	9.4	0.8489

Compare expression of checked genes

Lus10021053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.