Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42140 67 / 2e-13 VQ motif-containing protein (.1) AT2G44340 66 / 7e-13 VQ motif-containing protein (.1) AT3G58000 62 / 2e-11 VQ motif-containing protein (.1) AT3G60090 56 / 1e-09 VQ motif-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004172 [exp] 294 / 1e-100 AT2G42140 72 / 2e-15 VQ motif-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G192100 [exp] 77 / 3e-17 AT2G42140 86 / 2e-21 VQ motif-containing protein (.1) Potri.016G046000 [exp] 75 / 2e-16 AT3G58000 120 / 1e-34 VQ motif-containing protein (.1) Potri.001G230800 [exp] 61 / 2e-11 AT2G44340 79 / 6e-19 VQ motif-containing protein (.1) Potri.009G024200 [exp] 60 / 3e-11 AT3G58000 73 / 7e-17 VQ motif-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10021054 pacid=23182304 polypeptide=Lus10021054 locus=Lus10021054.g ID=Lus10021054.BGIv1.0 annot-version=v1.0 ATGAAGAAACCAAACAACAGAATTTCAACGGCTGCCGCCGCCGCTCAGTCTTCTTCTTCCTCTTCTTCCGCCGTTCCATCTCACTGTTCTTCCCCGCCGG GGCTAAGCTTTCACAGAGACTCGCGTCCAATCACCAAACCACCACCAAGTTCCAACACTACCGTCACTAATAATAGTAATAATAAGAACAAGCCCCCCAA GATCAGAATAATCCACATCTTCGCCCCGGAGATCATCAAGACCGACGTCGTCAACTTCCGCGAGCTCGTCCAGCGCCTCACCGGGAAACCCACTCCCGAT CACCATCACCTCAGCGACAAGAAACAACACAAGTCAAAGCAGTTTCAGCCGTCAAATCCAACGGAGCCGTCATACGGTAGGTATCAACAGCGACGGGAAG ATGATGGGGCGACAAAAATGGGTACGAGTACTGATTTCAGTAGCTATAGCGACGAAATGAATAGTGACTACGGCAGTGAGTTGGCCGGTGGTTCTACTTC TCGGTTTGAGTTTATGGGCAGGATGGTTAAGGAGGAAGATGGAGACCATATGGCGTGGGTTAATAATAGTGACGGCGACTGTGGAGTTAACGACCGGCGG AGTGGTGAGTATTTTGAGGAGATCGATGGGTTCATCCAAGAGCTTGGAGGTGATCATCAGTTCCCGTTGATGGAACCGAATTTTCATTACGAGCAACGTA ATATTATTAATACTTACGGCAGCCATCATCATCTTCACGGATATGGGGAAGCTGCTCATCAGTTTGCCTGA
AA sequence Show only first row Show all	>Lus10021054 pacid=23182304 polypeptide=Lus10021054 locus=Lus10021054.g ID=Lus10021054.BGIv1.0 annot-version=v1.0 MKKPNNRISTAAAAAQSSSSSSSAVPSHCSSPPGLSFHRDSRPITKPPPSSNTTVTNNSNNKNKPPKIRIIHIFAPEIIKTDVVNFRELVQRLTGKPTPD HHHLSDKKQHKSKQFQPSNPTEPSYGRYQQRREDDGATKMGTSTDFSSYSDEMNSDYGSELAGGSTSRFEFMGRMVKEEDGDHMAWVNNSDGDCGVNDRR SGEYFEEIDGFIQELGGDHQFPLMEPNFHYEQRNIINTYGSHHHLHGYGEAAHQFA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44340			VQ motif-containing protein (....		Lus10021054 [exp]	0	1
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10016105 [exp]	7.2	0.8812
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10001589 [exp]	17.2	0.8677
					Lus10019690 [exp]	21.2	0.8633
AT5G46080			Protein kinase superfamily pro...		Lus10015326 [exp]	33.6	0.8700
					Lus10019691 [exp]	39.0	0.8341
AT2G23560		ATMES7	ARABIDOPSIS THALIANA METHYL ES...		Lus10000840 [exp]	39.9	0.7957
AT4G12545			Bifunctional inhibitor/lipid-t...		Lus10024624 [exp]	45.2	0.8516
AT4G38260			Protein of unknown function (D...		Lus10016024 [exp]	49.4	0.8650
AT5G24090		ATCHIA	chitinase A (.1)		Lus10027560 [exp]	50.5	0.8499
					Lus10012067 [exp]	51.8	0.8598

Compare expression of checked genes

Lus10021054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.