Plant FIBer expression Database

Lus10021055 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G42130 277 / 3e-93 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5)
AT3G58010 276 / 2e-92 PGL34 plastoglobulin 34kD (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004171
[exp]
355 / 2e-124 AT2G42130 378 / 3e-133 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5)
Lus10012003
[exp]
333 / 9e-115 AT2G42130 383 / 3e-134 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5)
Lus10016263
[exp]
290 / 1e-98 AT2G42130 346 / 1e-120 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G045900
[exp]
299 / 2e-101 AT2G42130 366 / 1e-127 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5)
Potri.006G192200
[exp]
291 / 1e-98 AT2G42130 361 / 1e-125 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5)
PFAM info
Representative CDS sequence
>Lus10021055 pacid=23182354 polypeptide=Lus10021055 locus=Lus10021055.g ID=Lus10021055.BGIv1.0 annot-version=v1.0
ATGGCTGCAGCAACGGTAGCCTCGTCGCTTCCTTCTATTCCGGCAGCTCGTTCCCGCTACTCATCCGCCGCTTCCTCCTTCTCGTCGACGACTGGCGTCG
CGAGGACCACCGTCGGACGCCAAAAAGTCCGGCTAAGAATGTCGTGCAGAGCAATGGTTCAGCAGACCGTACAGGGAGCTCCCGCGGCCTACGCCAAGGA
AATGGAGCGCCTCTCCGCTAAGGAATCGCTGCTCCTTGCCATTGCTTTTGATTTCAAATCAATGAAATTGGAGAGTCGGATTCGTTTGAATTCTCAGTTC
AAAGATGCTGGGGGATTTGAAGCTCTGGTGACGGGGAAGACAACAGAAGTGCAGAAGATTGATGTGAATGAAAGGATTACTGGTCTTGAGCGTCTCAATC
CTACGCCTAGACCAACTACGAGATTTCCTTCAGATTTGGCTAATCTATCAAACATGGATGTGGTGATTAAGGAAGGGAAAGCCAAGGCCACTGCTAATAT
GAAGCTCTTCTACTCGATAGAAAGCAAGTTTACTCTCTCTTCACAGTTAACTGTGGAAGGTCCACTTAGAATGAAAGAGGAATATGTTGAAGGGTTTCTT
GAGACCCCGAAAGTTATTGAAGAATCACTACCGGAACAGCTAAAAGGAGCACTTGGTCAGGCTATTAGCACGGTGCAACAACTCCCCGCCCCCATAAGGG
ATGTCATTGCAGGTGGCCTAAGAGTTCCATTAAATTCGTACGTGTTTCCGATGCAGATAATGAGGGATGCTGCTGGAGTACCCGAAGTTCTTACCAGGCT
GGAAACACAACCTGCAGCCATTCCAGACACTGTCGTCACAGAGTATGAAAGCTAG
AA sequence
>Lus10021055 pacid=23182354 polypeptide=Lus10021055 locus=Lus10021055.g ID=Lus10021055.BGIv1.0 annot-version=v1.0
MAAATVASSLPSIPAARSRYSSAASSFSSTTGVARTTVGRQKVRLRMSCRAMVQQTVQGAPAAYAKEMERLSAKESLLLAIAFDFKSMKLESRIRLNSQF
KDAGGFEALVTGKTTEVQKIDVNERITGLERLNPTPRPTTRFPSDLANLSNMDVVIKEGKAKATANMKLFYSIESKFTLSSQLTVEGPLRMKEEYVEGFL
ETPKVIEESLPEQLKGALGQAISTVQQLPAPIRDVIAGGLRVPLNSYVFPMQIMRDAAGVPEVLTRLETQPAAIPDTVVTEYES

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G42130 Plastid-lipid associated prote... Lus10021055
[exp]
0 1
AT5G22620 phosphoglycerate/bisphosphogly... Lus10020553
[exp]
1.0 0.9612
AT1G44575 CP22, PSBS, NPQ... PHOTOSYSTEM II SUBUNIT S, NONP... Lus10029680
[exp]
4.7 0.9478
AT2G30950 FTSH2, VAR2 VARIEGATED 2, FtsH extracellul... Lus10001054
[exp]
6.7 0.9396
AT1G44575 CP22, PSBS, NPQ... PHOTOSYSTEM II SUBUNIT S, NONP... Lus10042720
[exp]
7.7 0.9384
AT1G33110 MATE efflux family protein (.1... Lus10020307
[exp]
7.7 0.9134
AT3G53130 CYP97C1, LUT1 LUTEIN DEFICIENT 1, CYTOCHROME... Lus10023891
[exp]
7.9 0.9273
AT5G42270 FTSH5, VAR1 VARIEGATED 1, FtsH extracellul... Lus10021824
[exp]
8.9 0.9362
AT2G30950 FTSH2, VAR2 VARIEGATED 2, FtsH extracellul... Lus10001420
[exp]
9.2 0.9345
AT5G08720 unknown protein Lus10025701
[exp]
11.5 0.9206
AT2G21340 MATE efflux family protein (.1... Lus10017964
[exp]
14.1 0.8974

Lus10021055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.