Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06750 514 / 0 Protein phosphatase 2C family protein (.1.2.3) AT3G51370 410 / 1e-142 Protein phosphatase 2C family protein (.1.2) AT5G66080 408 / 2e-141 Protein phosphatase 2C family protein (.1) AT3G12620 387 / 4e-133 Protein phosphatase 2C family protein (.1.2) AT4G38520 385 / 3e-132 Protein phosphatase 2C family protein (.1.2) AT3G17090 383 / 1e-131 Protein phosphatase 2C family protein (.1.2) AT3G55050 382 / 2e-131 Protein phosphatase 2C family protein (.1.2) AT4G33920 375 / 1e-128 Protein phosphatase 2C family protein (.1) AT5G02760 342 / 8e-116 Protein phosphatase 2C family protein (.1) AT3G16560 145 / 1e-38 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004170 [exp] 767 / 0 AT5G06750 518 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10041861 [exp] 412 / 7e-143 AT3G51370 630 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10005054 [exp] 399 / 2e-137 AT4G38520 582 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10027825 [exp] 398 / 3e-137 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10040346 [exp] 390 / 1e-134 AT3G12620 616 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10023470 [exp] 389 / 8e-134 AT3G12620 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10030302 [exp] 385 / 1e-132 AT3G12620 597 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10025076 [exp] 385 / 3e-132 AT4G38520 609 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10024008 [exp] 383 / 2e-131 AT4G38520 605 / 0.0 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G192600 [exp] 584 / 0 AT5G06750 572 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.016G045600 [exp] 580 / 0 AT5G06750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.009G137400 [exp] 417 / 8e-145 AT4G38520 657 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G108500 [exp] 412 / 4e-143 AT3G51370 646 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G177100 [exp] 410 / 3e-142 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.007G061100 [exp] 398 / 2e-137 AT3G51370 590 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G214700 [exp] 387 / 4e-133 AT3G12620 542 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.001G297200 [exp] 384 / 6e-132 AT4G33920 563 / 0.0 Protein phosphatase 2C family protein (.1) Potri.008G104300 [exp] 382 / 2e-131 AT3G17090 568 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G046900 [exp] 379 / 3e-130 AT3G12620 543 / 0.0 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10021056 pacid=23182416 polypeptide=Lus10021056 locus=Lus10021056.g ID=Lus10021056.BGIv1.0 annot-version=v1.0 ATGCTCCTGTCGTGGCTCGCGCGTATAGCTATGGCCTGCTGGAGACCCGTCGTCCGGAGGTATGCCCGCATGAGCAAGGATGACTCCCCCTCCACCGCCG GCGGACTTAATAGCAGCAGCAATGACGATCTTGAACTCGGCGGAGGTGAAAGAGATTCGTTGCTCTGGTCTAGGGATTTGGAGAAGTATTCTTGTGGGGA ATTCTCTTTCGCCGTCGTTCAAGCCAATGACGTCATCGAGGATCACAGCCAAGTCGAGAGCGGCCGTGACTCCGTCTTCGTCGGCGTCTACGACGGCCAC GGCGGCCCCGAGGCCTCCCGCTTCATCTCCGACCATCTCTTCAAGCATTTCACCAGGTTTGGTAGAGATTCAGGAACAATCTCGGCGGAGACTCTTAGGC ACGCATTCTCAGCGACGGAAGATGGATTTCTCACCGTAGTGCGCAGGAGTTACGAGATAAAGCCATTGATGGCTGCAATTGGTTCGTGCTGCTTGGCTGG TGTTATATACAGAGGCACTCTGTACGTCGCCAATCTAGGGGATTCCAGAGCTGTGATAGGTTGCTTATCTCGACGATCGAAGAAGATCGTCGCCGAGCAG CTGACGAACGATCACAATGCTAGCATGGAAGAGGTCAGAGCAGAGCTGAAATCCTTGCATCCGGATGACTCCCACATTGTTGTGATGAAGCATGGCGCTT GGCGCATCAAAGGCATCATTCAGGTGTCAAGATCGATAGGCGATGCGTACCTGAAGAGGCCGGAGTTTTCGCTGAATCCTTCGTTCCCGCGGTTTCACCT TTCCGAACCAATCAGGCGTCCTGTGCTGACATCGGAGCCGTCGATAGTGTCGAGAGATTTGCAGCCTGAGGACAAGTTTCTCATTTTCGCATCGGATGGA CTATGGGAGCACATCACTAACCAGGAAGCAGTCGAGATTGTACACAACAACCAGCGAACCGGGATAGCGAGAAGGCTAGTGGAAGCAGCACTGAACAGAG CATCTGTGAAGAGGGCCATGACTTACCAAGAGCTGAAGAATGTGGAAAGAGGTCAGAGAAGGACCTACCACGACGATATCACTGTGGTCGTCGTCTTCAT AGACCACGAGAACTCGTCGGTACCTGAGATTTCGGTTCGAGGGTTTGTCGACACAGTCGGGCCATCGAATTTTAACATAGCTCCTTGA
AA sequence Show only first row Show all	>Lus10021056 pacid=23182416 polypeptide=Lus10021056 locus=Lus10021056.g ID=Lus10021056.BGIv1.0 annot-version=v1.0 MLLSWLARIAMACWRPVVRRYARMSKDDSPSTAGGLNSSSNDDLELGGGERDSLLWSRDLEKYSCGEFSFAVVQANDVIEDHSQVESGRDSVFVGVYDGH GGPEASRFISDHLFKHFTRFGRDSGTISAETLRHAFSATEDGFLTVVRRSYEIKPLMAAIGSCCLAGVIYRGTLYVANLGDSRAVIGCLSRRSKKIVAEQ LTNDHNASMEEVRAELKSLHPDDSHIVVMKHGAWRIKGIIQVSRSIGDAYLKRPEFSLNPSFPRFHLSEPIRRPVLTSEPSIVSRDLQPEDKFLIFASDG LWEHITNQEAVEIVHNNQRTGIARRLVEAALNRASVKRAMTYQELKNVERGQRRTYHDDITVVVVFIDHENSSVPEISVRGFVDTVGPSNFNIAP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06750			Protein phosphatase 2C family ...		Lus10021056 [exp]	0	1
AT4G28550			Ypt/Rab-GAP domain of gyp1p su...		Lus10022905 [exp]	4.5	0.8328
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10005784 [exp]	7.1	0.8222
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028196 [exp]	9.5	0.8393
AT5G40610			NAD-dependent glycerol-3-phosp...		Lus10014889 [exp]	10.5	0.8141
AT2G19580		TET2	tetraspanin2 (.1)		Lus10007998 [exp]	11.3	0.8009
AT5G10010			unknown protein		Lus10005778 [exp]	13.2	0.8433
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10009119 [exp]	15.2	0.7651
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Lus10023359 [exp]	20.8	0.8175
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10010410 [exp]	23.6	0.7150
AT1G78560			Sodium Bile acid symporter fam...		Lus10035803 [exp]	24.2	0.7456

Compare expression of checked genes

Lus10021056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.