Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12100 441 / 7e-155 Cation efflux family protein (.1.2) AT2G04620 62 / 4e-10 Cation efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004168 [exp] 680 / 0 AT3G12100 511 / 0.0 Cation efflux family protein (.1.2) Lus10004102 [exp] 57 / 2e-08 AT2G04620 784 / 0.0 Cation efflux family protein (.1) Lus10013358 [exp] 57 / 2e-08 AT2G04620 783 / 0.0 Cation efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G045200 [exp] 504 / 8e-180 AT3G12100 536 / 0.0 Cation efflux family protein (.1.2) Potri.005G110300 [exp] 59 / 4e-09 AT2G04620 483 / 2e-158 Cation efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01545 [flax] [poplar] Cation_efflux Cation efflux family
Representative CDS sequence Show only first row Show all	>Lus10021058 pacid=23182335 polypeptide=Lus10021058 locus=Lus10021058.g ID=Lus10021058.BGIv1.0 annot-version=v1.0 ATGAGGAAGAGCGATTCCTTCAAGCATCCTTGGAGCGAGGACTTCGATCGGCGGTACGCTTACTCACGCCAGTCGTCGTTTCGACAACAGCAAGAACTGC CGCGAACTCCGGTTTCGTTTCTCCCAAATGATTCGTCGGCGAAGCCTTTTCTCTCCCGGACTTCCTCGAGCATCGATATGCCACCGGAAGTCTATAACTA TTCCTTCAATTACCAAAACGATGGCAGTTTTTCCGACTCCAAGGACCTGGCGGCCGGCGGCAGGAATGAGAATTTGCCGGTGGTTTCCGTGTTTAGAGCT GTAAGGTACGGGAGCAGGCAAATGAGGAGACTATGTTTGATGATATTCCTTAATGTTGCGTATTCTACTACTGAGTTCGCCATTGGCCTGTTTAGTGGCC GTATAGGTTTGGTATCGGATGCATTTCATTTGACGTTTGGCTGTGGTCTCCTTACATTTTCCTTGTTTGCTATGGCTGCCTCACGGAGAAAGCCTGATCA TGTTTACACTTATGGACAGCTGTTTCTGCTTTTCCTGTCATTCTCCTTAGCCGTGGAAGCTCTGCATGCATTCATACAAGATGAATCCGAGCATAAGCAT TATTTGATTGTTTCGGCAGTGACAAACTTGGCGGTGAATCTTATTGGTGTCTGGTTCTTCAGGAACTATGCTAGAGTGAAGATTGTGTACAGAAATGCTG AAGACATGAATTACCATTCAGTTTGCTTGCATGTCCTTGCAGATTCCATCCGCAGAGTTAAGAATGCAGAGGTTCTTTGCTTGGGGCTCGTTTCCTTTAC AGTCTTTATGCTTGTCATGCCTCTATTCAAAGCAGCCGGTGGTGTCTTGCTTCAAACAGCACCACCAAGCATTCCACCTTCAGCATTGAGCAAATGCTCA AGACAGGTCAGCACTATTTCTGCTTGTGAAGATATTTCCCAAGTATCCGAAGCGCGTTTCTGGGAACTAGTTCCCGGCCACGCTGTAGGTTCCATCTCAT TGCAGTTGAAGAATGGAACAGATGATCGGCAGGTACTACAGTTTGTACACGGTCTGTACCACGACTTAGGGGTACTGGATCTCACTGTGCAGACTGATCA GGACTGA
AA sequence Show only first row Show all	>Lus10021058 pacid=23182335 polypeptide=Lus10021058 locus=Lus10021058.g ID=Lus10021058.BGIv1.0 annot-version=v1.0 MRKSDSFKHPWSEDFDRRYAYSRQSSFRQQQELPRTPVSFLPNDSSAKPFLSRTSSSIDMPPEVYNYSFNYQNDGSFSDSKDLAAGGRNENLPVVSVFRA VRYGSRQMRRLCLMIFLNVAYSTTEFAIGLFSGRIGLVSDAFHLTFGCGLLTFSLFAMAASRRKPDHVYTYGQLFLLFLSFSLAVEALHAFIQDESEHKH YLIVSAVTNLAVNLIGVWFFRNYARVKIVYRNAEDMNYHSVCLHVLADSIRRVKNAEVLCLGLVSFTVFMLVMPLFKAAGGVLLQTAPPSIPPSALSKCS RQVSTISACEDISQVSEARFWELVPGHAVGSISLQLKNGTDDRQVLQFVHGLYHDLGVLDLTVQTDQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12100			Cation efflux family protein (...		Lus10021058 [exp]	0	1
AT1G73170			P-loop containing nucleoside t...		Lus10012291 [exp]	2.0	0.8845
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10009883 [exp]	2.2	0.9097
AT1G77210		AtSTP14	sugar transport protein 14, su...		Lus10009714 [exp]	5.5	0.8922
AT2G45500			AAA-type ATPase family protein...		Lus10038001 [exp]	5.9	0.8771
AT4G37480			Chaperone DnaJ-domain superfam...		Lus10019286 [exp]	6.8	0.8362
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10040183 [exp]	8.1	0.8993
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10021351 [exp]	11.7	0.8272
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Lus10011352 [exp]	12.2	0.8504
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10016763 [exp]	13.7	0.8644
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10015816 [exp]	14.1	0.8842

Compare expression of checked genes

Lus10021058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.