Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06740 626 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60320 322 / 3e-101 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45410 313 / 3e-98 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 310 / 6e-97 Concanavalin A-like lectin protein kinase family protein (.1) AT5G10530 307 / 4e-96 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60300 309 / 6e-96 LecRK-I.9 lectin receptor kinase I.9, Concanavalin A-like lectin protein kinase family protein (.1.2.3) AT3G45430 303 / 5e-94 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45420 302 / 5e-94 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60270 301 / 2e-93 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 299 / 1e-92 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004166 [exp] 1080 / 0 AT5G06740 682 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10036986 [exp] 628 / 0 AT5G06740 456 / 8e-155 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016257 [exp] 623 / 0 AT5G06740 638 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10028699 [exp] 388 / 2e-126 AT5G06740 455 / 1e-151 Concanavalin A-like lectin protein kinase family protein (.1) Lus10009423 [exp] 389 / 7e-126 AT5G06740 446 / 2e-147 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020452 [exp] 336 / 2e-106 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 334 / 1e-105 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 330 / 2e-104 AT2G37710 755 / 0.0 receptor lectin kinase (.1) Lus10004277 [exp] 325 / 6e-103 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G193000 [exp] 707 / 0 AT5G06740 688 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G045000 [exp] 702 / 0 AT5G06740 702 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G146500 [exp] 395 / 1e-129 AT5G06740 411 / 5e-135 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G455500 [exp] 394 / 4e-129 AT5G06740 416 / 1e-136 Concanavalin A-like lectin protein kinase family protein (.1) Potri.004G209300 [exp] 372 / 4e-120 AT5G06740 368 / 3e-118 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 351 / 3e-112 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.018G028800 [exp] 340 / 2e-108 AT5G06740 371 / 1e-119 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004300 [exp] 325 / 5e-103 AT5G10530 743 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004500 [exp] 320 / 5e-101 AT5G10530 725 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.003G094700 [exp] 318 / 5e-100 AT5G10530 764 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10021060 pacid=23182364 polypeptide=Lus10021060 locus=Lus10021060.g ID=Lus10021060.BGIv1.0 annot-version=v1.0 ATGGCAGCGGATGCCATCCAGGTCACCGAAGACCACAGCGGCGCCCCAATCACAAACCTGCACGGCCGGATCCTATTCGACCGGCCGATTCGTCTACTCA CTTTCGACACCACATTCGTCCTCAGAATCTCTCCCCGGCCTCTGCCTGAGTCGATCCCAGGGGAAGGCCTGGCATTCGTGCTCACCGGAGACCCGAACAT GCCAGACGACAGTTCAGGCCAATGGCTCGGAATCGTGAACTCGAACACCAACGGATCGGCACAGATCGTAGCGGTGGAATTCGACACCAGGAAGAGTTAC CCTGAAGATCTGGATGATAATCATGTGGGGATCGATTTGGGCTCTGTTTACTCTGTTCAACAGGTTTCCCTTTCCGGAATCGATATCAACTTAGCGTCGG ATACGGATATAACCGTCAGGATTCAGTACGACGGCGACAATTTGACAGTTCTCTTCGAGGAAAGCAGCAGCCCGGTAATTACTAGGCCGATTGATCTGTC TTTGTATCTTCCTGAAGAGGTTTACGTGGGATTTACAGGGTCTACTAGTGAATATACACAGCTTAACTGCATAAGGTCATGGGAATTCATCGGATCAGAA ATTCCGGAAGGGAAAAAGATATGGGTTTGGATTGTTGTGTCAGTTGTATCTGTAATTGTGATTCTCATCTTTGTTTCTGGTTTAGTCTGCTGGAAAATGA GATATGGAGATGACAAATTCGACTTCGACCCTTATCCGACAATCGAGGAGGCGATTCAGGGCTCCTCGACAGCTCCTAGAAAATTCAAGCTGAAGGAGTT GAGGAAGGCTACAGGGAATTTCAATTCGAAGAACAAGCTTGGGAAAGGAGGATTCGGTACTGTTTACAAAGGAATTATCGAGAATAAGGAGATTGCGGTG AAGAAAGTGTCGAAGAAGACGACTCAGGGGAAGCAAGAGTTCATATCGGAGGTCATCACGATCGGGAATCTTCACCACCGCAATCTCGTGAAGCTAATCG GATGGGCTTACGAGAGGAAAGAGTATTTATTGGTTTATGAGTACATGCCCAACGGAAGCCTGGACCATTTCGTTTTCCATGGCGACAAGTTAGAAACGGG GAATAATAACGGACCGTCGTCGAATTTGATGAGCTGGGGTGTCAGGTTGCGGGTTATTTCGGGTGCGGCTCAGGCGTTGGAGTATCTGCACAACGGGTGC GAAAAGAAGGTTCTACACCGGGATATCAAGTCCAGCAACATAATGCTCGACTCCGAATTCAACGCCAAGCTGGGCGATTTCGGCCTAGCCAGGACTTATG TCCAGTCCGACCAGACCCACCACTCCACTAAGGAAGTGGCAGGGACGCCTGGCTACATGGCTCCCGAAGTTTTCCTGACAGGAAGGGCTACAGAGGAGAC AGATGTTTACGCATTCGGAATCTTGCTCCTCGAAGTTGCCTGCGGGAGGAAACCGGGCGGATGGATGGATCAGGATGATTACGGGAGCAACATCGTGAAG TGGGTTTGGGAGCTTTACAGGACGGAGAATCTGATGAATGCTGCTGATGCCAGATTGAATGGAGATTTCAACGCGGAGGAAATGGCATGTGTGTTGATTT TAGGGCTGGCTTGCTGCCATCCGAACCCGAATAACAGGCCTTCCATGAAATTTGTCCTGAAGGTAATGGCAGGGGAAGCTGAAGCCCCTGAGCTCCCCCT CGAAAGGCCTGCTTTCGTGTGGCCTCCTTTGCCTCCGTCTTTCAAAGATAAGATTTACAAAGGAAGTCAGGTTACTTTGTTTACGGAACTTTCAGGTAGA TAA
AA sequence Show only first row Show all	>Lus10021060 pacid=23182364 polypeptide=Lus10021060 locus=Lus10021060.g ID=Lus10021060.BGIv1.0 annot-version=v1.0 MAADAIQVTEDHSGAPITNLHGRILFDRPIRLLTFDTTFVLRISPRPLPESIPGEGLAFVLTGDPNMPDDSSGQWLGIVNSNTNGSAQIVAVEFDTRKSY PEDLDDNHVGIDLGSVYSVQQVSLSGIDINLASDTDITVRIQYDGDNLTVLFEESSSPVITRPIDLSLYLPEEVYVGFTGSTSEYTQLNCIRSWEFIGSE IPEGKKIWVWIVVSVVSVIVILIFVSGLVCWKMRYGDDKFDFDPYPTIEEAIQGSSTAPRKFKLKELRKATGNFNSKNKLGKGGFGTVYKGIIENKEIAV KKVSKKTTQGKQEFISEVITIGNLHHRNLVKLIGWAYERKEYLLVYEYMPNGSLDHFVFHGDKLETGNNNGPSSNLMSWGVRLRVISGAAQALEYLHNGC EKKVLHRDIKSSNIMLDSEFNAKLGDFGLARTYVQSDQTHHSTKEVAGTPGYMAPEVFLTGRATEETDVYAFGILLLEVACGRKPGGWMDQDDYGSNIVK WVWELYRTENLMNAADARLNGDFNAEEMACVLILGLACCHPNPNNRPSMKFVLKVMAGEAEAPELPLERPAFVWPPLPPSFKDKIYKGSQVTLFTELSGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06740			Concanavalin A-like lectin pro...		Lus10021060 [exp]	0	1
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Lus10034385 [exp]	4.1	0.9512
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10031235 [exp]	4.5	0.9447
AT1G20870			HSP20-like chaperones superfam...		Lus10007642 [exp]	6.0	0.9389
AT5G47550			Cystatin/monellin superfamily ...		Lus10039104 [exp]	6.3	0.9357
AT5G39160			RmlC-like cupins superfamily p...		Lus10035185 [exp]	8.0	0.9360
AT5G51950			Glucose-methanol-choline (GMC)...		Lus10015012 [exp]	9.4	0.9256
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Lus10025903 [exp]	9.8	0.9357
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10033581 [exp]	11.6	0.9139
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011986 [exp]	12.8	0.9185
AT5G06730			Peroxidase superfamily protein...		Lus10008173 [exp]	16.2	0.8954

Compare expression of checked genes

Lus10021060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.