Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27660 91 / 4e-20 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G44370 78 / 2e-16 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G44380 73 / 9e-15 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G37820 72 / 4e-14 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G40590 67 / 1e-12 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G17740 66 / 2e-12 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G43520 56 / 1e-08 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G02610 55 / 3e-08 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G28270 53 / 6e-08 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G02630 52 / 3e-07 Cysteine/Histidine-rich C1 domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004165 [exp] 362 / 6e-125 AT2G27660 95 / 3e-21 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10016256 [exp] 249 / 3e-81 AT2G27660 107 / 8e-26 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10036411 [exp] 67 / 4e-12 AT4G12790 444 / 5e-156 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10003919 [exp] 44 / 5e-05 AT2G44380 179 / 2e-56 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10028723 [exp] 45 / 6e-05 AT1G20990 269 / 9e-89 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10037470 [exp] 44 / 0.0001 AT2G44380 177 / 5e-52 Cysteine/Histidine-rich C1 domain family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G057900 [exp] 212 / 3e-65 AT2G27660 145 / 2e-37 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.012G038400 [exp] 92 / 7e-21 AT2G27660 218 / 3e-65 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.001G229500 [exp] 89 / 8e-20 AT2G27660 171 / 5e-48 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.001G229900 [exp] 62 / 6e-11 AT2G28270 223 / 2e-72 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.005G258800 [exp] 50 / 8e-07 AT1G20990 270 / 1e-89 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044432 [exp] 47 / 7e-06 AT5G45730 135 / 7e-35 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044800 [exp] 44 / 0.0001 AT5G22355 260 / 3e-77 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.012G140133 [exp] 42 / 0.0001 AT4G01930 68 / 9e-14 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G047300 [exp] 42 / 0.0005 AT5G22355 234 / 1e-67 Cysteine/Histidine-rich C1 domain family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021061 pacid=23182431 polypeptide=Lus10021061 locus=Lus10021061.g ID=Lus10021061.BGIv1.0 annot-version=v1.0 ATGGATGCAAAAGAACAGAGTGCTAACCATCTCCACCATTTCACCCATCAACATCCCCTGAATAGAACCGTTTCGCCAGGAAACGTAGCCTGCCACGGCT GCAACTTCGAAATCGCGTCAGGCAATGACTTCTACGCTTGCAAAACCTGCAACTCATTCTCGTTACATAAGCTCTGTTTCCACTTGCCCAGAACCACCGT TCACCCTGCTCATCCTGACGAAACGCTCAACCTTGCTGCAATACAGTCACAATCATCTCCGTTGAAATGTAGAGCTTGTACTAAGATCATCACCGCCGGG TTCTACTACGGCGCTACTGGAGGAGGAGGAGGAATTTGGTATCATAACCTCTGTTTAACTCTGCCGCTCTCTGTTACCGTCTCCGGCCATCCTCACCCGC TAAAGATCCAATTTTCTCCGCCGTACGACTTCAGCTGCGACCTCTGCGCGAAACCCAGTTACAAAGGGTGGCTGTCCCGCTGCCGGTTCTGCGAATTCGA CGCCCACATCGCCTGCGCGATTTCCCACAAAACATCCGACCCGGCTGCCCTGCCAGAGAATCTGACCCGGCAGATTTCGAATTCTGCCCGGAACGGTCAG GAGATTCTGCAATTGCTCCAGCAGAGACTAGGGATTTCGATTTCCCGTGAAAATTCGACGGGTAGGCAGCAGCCGGCGGCGACTGCCGAAGAACGTAAGG AATCCGCGGCTTTCTCTACTCCCTCTCCTTATCCTCTTCTCCTCCGCGCCCTCCTTCTCCTCCGCGGACGCCCCCATCGAAATCGCCGTTTTCGTCGGTG TCGGTGGCGGACATCCCTAGCTATCAATTCAGCGACCTGTGCTTCTCGATCGACCTTCAGAAGTCTTTCTCCGGACCAGACGGGGAGAGGAAAGTGGCGG TGGGGCCAGCGCCTGCGCCGCCGAGTACTAAAAATTGGTGCGATTCGCATGCTCTGCTACAAAGCTCGATCAACGGGAAGATGA
AA sequence Show only first row Show all	>Lus10021061 pacid=23182431 polypeptide=Lus10021061 locus=Lus10021061.g ID=Lus10021061.BGIv1.0 annot-version=v1.0 MDAKEQSANHLHHFTHQHPLNRTVSPGNVACHGCNFEIASGNDFYACKTCNSFSLHKLCFHLPRTTVHPAHPDETLNLAAIQSQSSPLKCRACTKIITAG FYYGATGGGGGIWYHNLCLTLPLSVTVSGHPHPLKIQFSPPYDFSCDLCAKPSYKGWLSRCRFCEFDAHIACAISHKTSDPAALPENLTRQISNSARNGQ EILQLLQQRLGISISRENSTGRQQPAATAEERKESAAFSTPSPYPLLLRALLLLRGRPHRNRRFRRCRWRTSLAINSATCASRSTFRSLSPDQTGRGKWR WGQRLRRRVLKIGAIRMLCYKARSTGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27660			Cysteine/Histidine-rich C1 dom...		Lus10021061 [exp]	0	1
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10041878 [exp]	3.3	0.9015
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10028425 [exp]	4.5	0.8951
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10039256 [exp]	4.6	0.8949
AT1G12480		SLAC1, RCD3, CD...	SLOW ANION CHANNEL-ASSOCIATED ...		Lus10006678 [exp]	7.2	0.8809
AT1G08810	MYB	ATMYB60	myb domain protein 60 (.1.2)		Lus10009522 [exp]	10.2	0.8730
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Lus10018832 [exp]	10.7	0.8277
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009961 [exp]	10.9	0.8667
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10011732 [exp]	11.0	0.8537
AT3G53810			Concanavalin A-like lectin pro...		Lus10029315 [exp]	11.2	0.8306
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Lus10039643 [exp]	11.5	0.8704

Compare expression of checked genes

Lus10021061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.