Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42040 72 / 6e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004164 [exp] 192 / 6e-62 AT2G42040 80 / 5e-18 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G058000 [exp] 77 / 2e-16 AT2G42040 92 / 2e-21 unknown protein Potri.016G058100 [exp] 76 / 5e-16 AT2G42040 91 / 7e-21 unknown protein Potri.006G193300 [exp] 76 / 6e-16 AT2G42040 91 / 1e-20 unknown protein Potri.006G193500 [exp] 69 / 7e-14 AT2G42040 82 / 1e-17 unknown protein Potri.016G059400 [exp] 48 / 1e-06 AT2G42040 50 / 7e-07 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08879 [flax] [poplar] WRC WRC
Representative CDS sequence Show only first row Show all	>Lus10021062 pacid=23182376 polypeptide=Lus10021062 locus=Lus10021062.g ID=Lus10021062.BGIv1.0 annot-version=v1.0 ATGGGACAGTACCAGTCAGCAATTTGCAGCCAATCTGTTGGAGCAATGTGGTTTCCATCAGCAAGGAAGAAGAGCAGCTGGTTTTCGTCGTCGTCGTCCT CGTTATTCGACAACGGGCTAGACAGTAGTAGTGGTAAACGAGACGATGTGAAGAAACCACCGTTGAACAGAAGGAGAGGAGGAGGAGGAAGTGGTAATAG TACTAGTAGTAGAGTGATGGAAGCAGGGTCAAGGTGCAGCCGAGTCAACGGAAGGGGATGGAGGTGCTCTCAGCCTACTTTGGTTGGTTATGCTCTCTGT GAGCATCACTTGGGTAAAGCCCGCATCCGAACCATCTCCACCTCCACCACCACCACCACCCGACAACTGGGCTGCACCACCACTGGTTCAACCCATCCAA CGAAGCCTTCGCCATCATCATCATCATCGGATAATGTTGATCGAACAGAACAGAAACAGATGATGCCAAGTACTGCTGCTGATGTCGTAGAAGAGGACGA TGAGAATTACCAGAAGAAGAAGTCGAAGCTCGGGTCGGTTAAGGCTAGATCAATAAGCAGCTTGCTTGACCAAACCGATCATAATGCTGTTTCTTCACTA CTTCTGCTGCCTCATCATGCTCATAAATCATCGTCTTAA
AA sequence Show only first row Show all	>Lus10021062 pacid=23182376 polypeptide=Lus10021062 locus=Lus10021062.g ID=Lus10021062.BGIv1.0 annot-version=v1.0 MGQYQSAICSQSVGAMWFPSARKKSSWFSSSSSSLFDNGLDSSSGKRDDVKKPPLNRRRGGGGSGNSTSSRVMEAGSRCSRVNGRGWRCSQPTLVGYALC EHHLGKARIRTISTSTTTTTRQLGCTTTGSTHPTKPSPSSSSSDNVDRTEQKQMMPSTAADVVEEDDENYQKKKSKLGSVKARSISSLLDQTDHNAVSSL LLLPHHAHKSSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42040			unknown protein		Lus10021062 [exp]	0	1
AT5G24860		ATFPF1, FPF1	ARABIDOPSIS FLOWERING PROMOTIN...		Lus10020156 [exp]	2.0	0.6844
AT1G60410			F-box family protein (.1)		Lus10020292 [exp]	2.4	0.7064
AT4G17260			Lactate/malate dehydrogenase f...		Lus10006030 [exp]	2.8	0.7053
AT1G52490			unknown protein		Lus10022937 [exp]	6.7	0.7013
					Lus10017802 [exp]	14.5	0.6217
					Lus10008904 [exp]	15.8	0.6636
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10017700 [exp]	22.6	0.6155
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10041034 [exp]	23.2	0.6049
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10015094 [exp]	26.3	0.6329
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10026932 [exp]	27.5	0.5782

Compare expression of checked genes

Lus10021062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.