Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58030 307 / 8e-101 RING/U-box superfamily protein (.1.2.3.4) AT2G42030 222 / 5e-68 RING/U-box superfamily protein (.1) AT2G44410 128 / 8e-33 RING/U-box superfamily protein (.1) AT1G19310 117 / 2e-30 RING/U-box superfamily protein (.1) AT2G23780 116 / 4e-30 RING/U-box superfamily protein (.1) AT1G74990 110 / 7e-29 RING/U-box superfamily protein (.1) AT4G27470 100 / 5e-24 ATRMA3 RING membrane-anchor 3 (.1) AT4G03510 93 / 3e-21 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT4G28270 87 / 7e-20 ATRMA2 RING membrane-anchor 2 (.1) AT3G07200 50 / 5e-07 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004162 [exp] 693 / 0 AT3G58030 367 / 3e-124 RING/U-box superfamily protein (.1.2.3.4) Lus10029292 [exp] 482 / 2e-169 AT3G58030 374 / 6e-127 RING/U-box superfamily protein (.1.2.3.4) Lus10016255 [exp] 478 / 4e-168 AT3G58030 362 / 2e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10010791 [exp] 124 / 3e-33 AT1G19310 266 / 1e-90 RING/U-box superfamily protein (.1) Lus10016303 [exp] 124 / 6e-33 AT1G19310 268 / 2e-91 RING/U-box superfamily protein (.1) Lus10016796 [exp] 109 / 2e-27 AT2G23780 242 / 3e-81 RING/U-box superfamily protein (.1) Lus10018489 [exp] 105 / 4e-26 AT4G03510 159 / 7e-48 RING membrane-anchor 1 (.1.2) Lus10011184 [exp] 105 / 7e-26 AT4G03510 164 / 5e-50 RING membrane-anchor 1 (.1.2) Lus10022492 [exp] 105 / 7e-26 AT2G23780 241 / 1e-80 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G058300 [exp] 409 / 1e-140 AT3G58030 331 / 7e-110 RING/U-box superfamily protein (.1.2.3.4) Potri.006G193600 [exp] 408 / 3e-140 AT3G58030 389 / 2e-132 RING/U-box superfamily protein (.1.2.3.4) Potri.009G023300 [exp] 157 / 2e-43 AT2G44410 192 / 3e-56 RING/U-box superfamily protein (.1) Potri.001G229600 [exp] 150 / 8e-41 AT2G44410 191 / 6e-56 RING/U-box superfamily protein (.1) Potri.002G133000 [exp] 122 / 3e-32 AT1G19310 244 / 5e-82 RING/U-box superfamily protein (.1) Potri.005G127900 [exp] 120 / 2e-31 AT2G23780 234 / 3e-78 RING/U-box superfamily protein (.1) Potri.014G040400 [exp] 120 / 2e-31 AT1G19310 226 / 4e-75 RING/U-box superfamily protein (.1) Potri.007G031600 [exp] 115 / 1e-29 AT2G23780 227 / 4e-75 RING/U-box superfamily protein (.1) Potri.013G132300 [exp] 100 / 5e-24 AT4G03510 191 / 2e-60 RING membrane-anchor 1 (.1.2) Potri.019G100800 [exp] 98 / 5e-23 AT4G03510 187 / 1e-58 RING membrane-anchor 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10021063 pacid=23182419 polypeptide=Lus10021063 locus=Lus10021063.g ID=Lus10021063.BGIv1.0 annot-version=v1.0 ATGGAGGAGGCACCTGAAGCTATGAATCTCGACTTGAATCTCGGTCCTGGACCTGGCGCAGAGTCAGAAACCGTAGCTAGTGAAGGTATGAACTTGGAGG ATTGGATTGAGGATGACCCCATTGAAAGGTTAAGGGAAGCTGTCCGGATTCAAGCTAGGCAGCGGTGGAGATGGCGGCAAGTCCAATTCGAGCGCCAAAG TCAAACACTTTCTGTGGAGTTGGATCAATTGATTGGTGGCGATTCTGGAAGTTTGGGTACGTTACAAGCCGGTGAAGGTAGTGTAGCAGCTGAAGAACGT GCCAACGATTCCGACCCCAAAATGTGCGAAAATGGGAACGGGATATTACAAGACGAAATGTTGGGCAAGAAGGATGATGTTGCGAAGGGGAATGGCACTC ATGGTAGCTTCTTTGATTGCAACATTTGCTTCGATCTGGCATCGGATCCTGTTGTTACTTGCTGCGGCCATCTCTTCTGCTGGGCGTGCCTTTATAGATG GTTGCATCTCCATTCGGATGCGAAAGAATGCCCTATATGCAAAGGGGAGGTCACCATAAAAAATGTGACCCCAATCTACGGCCGCGGTGGTACTAATAAT TCGCGTCCGCCTGAAGAGGACTCGAGTCTCGAGATCCCGAACAGGCCCCCAGGGAGGCGAGTCGAGAGTCTGAGGCAGACCATTCAGAGGAATCATTTCA GCTTCCCGATGGAAGAGGTGATTCGACGCCTTGGAAGTAGGCTCGACATGGTACGAGAGTCTCAAGATCCGAGCGATATCACCGAGAGGAGTAGTTCGCT TCTCAATAGGATAATGTCTTTTCGGGGAATGCGTGGGGAGGCTCCGAATCCTAGCGAGGTAGTGGATTTGACACAAAGCGGGACAAGCAGTAGTCCGGAA AGAGGTCGAGCCAGGCTTCACTCGATGCTGTTCCGGAGGTCCCAACCGGTGACTCAAAGAGCTTCTTCGGTTGCTCACGCTTCTTTGTCGTCGGCTTTGA GTACTCACCAAATAGTTGAATATCTCCGGAACAACCCTTTGGTCAGGAACCGGGACCAAGCTGTGGACGATAGGGATTCGTTCTCGAGCATTGCTGCAGT AATAAACTCGGAGAGCCAAATGGACACTGCTGTGGAAATCGATTCCATGGTCTCGCTTTCTACTTCTTCTTCGAGGAGGAGAAACGATAACTCGAGAGCC GCTGCTGATGTGGACAGCGGGGATTCTCGAGCTCCGAGGAGGAGGAGGTTAAATTAG
AA sequence Show only first row Show all	>Lus10021063 pacid=23182419 polypeptide=Lus10021063 locus=Lus10021063.g ID=Lus10021063.BGIv1.0 annot-version=v1.0 MEEAPEAMNLDLNLGPGPGAESETVASEGMNLEDWIEDDPIERLREAVRIQARQRWRWRQVQFERQSQTLSVELDQLIGGDSGSLGTLQAGEGSVAAEER ANDSDPKMCENGNGILQDEMLGKKDDVAKGNGTHGSFFDCNICFDLASDPVVTCCGHLFCWACLYRWLHLHSDAKECPICKGEVTIKNVTPIYGRGGTNN SRPPEEDSSLEIPNRPPGRRVESLRQTIQRNHFSFPMEEVIRRLGSRLDMVRESQDPSDITERSSSLLNRIMSFRGMRGEAPNPSEVVDLTQSGTSSSPE RGRARLHSMLFRRSQPVTQRASSVAHASLSSALSTHQIVEYLRNNPLVRNRDQAVDDRDSFSSIAAVINSESQMDTAVEIDSMVSLSTSSSRRRNDNSRA AADVDSGDSRAPRRRRLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58030			RING/U-box superfamily protein...		Lus10021063 [exp]	0	1
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10002733 [exp]	3.5	0.8803
AT4G10790			UBX domain-containing protein ...		Lus10017317 [exp]	3.5	0.8897
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10040091 [exp]	5.7	0.8803
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10029631 [exp]	6.9	0.8480
AT2G36930	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10014426 [exp]	7.1	0.8327
AT2G37860		LCD1	LOWER CELL DENSITY 1, Protein ...		Lus10012657 [exp]	7.4	0.8746
AT3G22110		PAC1	20S proteasome alpha subunit C...		Lus10004236 [exp]	7.5	0.8768
AT1G12820		IPS1, AFB3	auxin signaling F-box 3 (.1)		Lus10011261 [exp]	8.4	0.8525
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10028823 [exp]	13.2	0.8731
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10029220 [exp]	20.3	0.8618

Compare expression of checked genes

Lus10021063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.