Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06710 246 / 7e-81 HD HAT14 homeobox from Arabidopsis thaliana (.1.2) AT4G37790 211 / 9e-68 HD HAT22 Homeobox-leucine zipper protein family (.1) AT4G16780 208 / 9e-67 HD ATHB2, HAT4, ATHB-2 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) AT2G22800 203 / 7e-65 HD HAT9 Homeobox-leucine zipper protein family (.1) AT5G47370 200 / 1e-63 HD HAT2 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT3G60390 197 / 6e-62 HD HAT3 homeobox-leucine zipper protein 3 (.1) AT2G44910 196 / 2e-61 HD ATHB4, ATHB-4 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, homeobox-leucine zipper protein 4 (.1) AT4G17460 191 / 3e-60 HD HAT1 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT2G01430 157 / 4e-47 HD ATHB17, ATHB-17 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17, homeobox-leucine zipper protein 17 (.1) AT1G70920 142 / 7e-42 HD ATHB18 homeobox-leucine zipper protein 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004161 [exp] 388 / 2e-136 AT5G06710 263 / 5e-86 homeobox from Arabidopsis thaliana (.1.2) Lus10029293 [exp] 298 / 1e-100 AT5G06710 274 / 5e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10016254 [exp] 286 / 4e-96 AT5G06710 274 / 4e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10007849 [exp] 224 / 2e-72 AT4G16780 303 / 6e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10004759 [exp] 221 / 2e-71 AT4G16780 305 / 1e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10004377 [exp] 211 / 2e-67 AT4G16780 265 / 1e-87 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10040175 [exp] 209 / 1e-66 AT4G16780 280 / 1e-93 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10011569 [exp] 159 / 3e-48 AT4G37790 162 / 3e-49 Homeobox-leucine zipper protein family (.1) Lus10019256 [exp] 155 / 5e-47 AT4G37790 162 / 3e-49 Homeobox-leucine zipper protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G193700 [exp] 278 / 2e-93 AT5G06710 251 / 1e-81 homeobox from Arabidopsis thaliana (.1.2) Potri.016G059000 [exp] 276 / 1e-92 AT5G06710 241 / 8e-78 homeobox from Arabidopsis thaliana (.1.2) Potri.009G023600 [exp] 258 / 4e-85 AT5G06710 243 / 8e-78 homeobox from Arabidopsis thaliana (.1.2) Potri.001G229700 [exp] 255 / 6e-84 AT5G06710 269 / 4e-88 homeobox from Arabidopsis thaliana (.1.2) Potri.016G058600 [exp] 246 / 7e-83 AT5G06710 239 / 9e-79 homeobox from Arabidopsis thaliana (.1.2) Potri.007G008200 [exp] 224 / 4e-73 AT4G37790 299 / 3e-102 Homeobox-leucine zipper protein family (.1) Potri.005G147100 [exp] 220 / 2e-71 AT4G37790 270 / 1e-90 Homeobox-leucine zipper protein family (.1) Potri.002G113400 [exp] 214 / 2e-69 AT4G37790 210 / 3e-67 Homeobox-leucine zipper protein family (.1) Potri.001G155100 [exp] 215 / 4e-69 AT4G16780 335 / 6e-116 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Potri.003G079800 [exp] 211 / 2e-67 AT4G16780 320 / 8e-110 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02183 [flax] [poplar] HALZ Homeobox associated leucine zipper CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10021064 pacid=23182365 polypeptide=Lus10021064 locus=Lus10021064.g ID=Lus10021064.BGIv1.0 annot-version=v1.0 ATGCCTGCAGTGGTGACGAGTTCGGATCATGGGGCTGGAGACGGGTCTAGACGGTTCGACGTGAACCGTTTGTCGGCGGAGGAAGGAGACGACGTCGACG GCGCGTCTCTGTCGTCTCCTAACAGCGCTGCGTCGTCGTTTCAGATGGAGTTCGGGATCGGCCTTGGGAGCAAGAGGGATTTGGAAGGTGACCGAGCCGG TTCAAGAGCAAGCGACGATGATGAAAACGGGTCGACCCGGAAGAAGCTCCGACTCTCCAAAGACCAATCTGCTTTTCTCGAGGAGAGCTTCAAAGAACAC AGCACTCTCAACCCCAAGCAAAAGCAAGCGTTGGCTAAGCAGTTGAATCTACGGCCAAGGCAGGTTGAAGTGTGGTTTCAGAACAGAAGGGCCAGGACAA AGCTGAAGCAAACAGAGGTGGACTGTGAGTATTTAAAGAGGTGCTGCGAGACACTGACAGAAGAGAACAGGAGGTTGCAAAAGGAACTGCAGGAATTAAG AGCTCTCAAGACCAACTCTCAGCCTTTCTACATGCAGCCCCCTGCTACTACTCTCACCATGTGCCCTTCCTGTGAGCGCGTCGCCACAACCACAACCACT ACCGCCGGCGGCAACAACAAACCAACCACCAAGTCATCATCATCAACAGCACTGTCATTAGGTAACATCAGTAATAATGGCAGGGCAGTGTACCCATTCA GTGATGTGCAGCTACAAATGTCTCAGCAGAATCAACCTAACCAGCCTGCTGATTCATGA
AA sequence Show only first row Show all	>Lus10021064 pacid=23182365 polypeptide=Lus10021064 locus=Lus10021064.g ID=Lus10021064.BGIv1.0 annot-version=v1.0 MPAVVTSSDHGAGDGSRRFDVNRLSAEEGDDVDGASLSSPNSAASSFQMEFGIGLGSKRDLEGDRAGSRASDDDENGSTRKKLRLSKDQSAFLEESFKEH STLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTNSQPFYMQPPATTLTMCPSCERVATTTTT TAGGNNKPTTKSSSSTALSLGNISNNGRAVYPFSDVQLQMSQQNQPNQPADS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10021064 [exp]	0	1
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10012226 [exp]	2.2	0.9083
AT1G11340			S-locus lectin protein kinase ...		Lus10013910 [exp]	10.0	0.9015
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10014709 [exp]	13.0	0.9002
AT3G23880			F-box and associated interacti...		Lus10036065 [exp]	21.4	0.8717
AT4G01870			tolB protein-related (.1)		Lus10038052 [exp]	30.9	0.8936
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10006353 [exp]	31.6	0.8931
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10012212 [exp]	32.2	0.8933
AT4G21920			unknown protein		Lus10006774 [exp]	33.7	0.8849
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10018913 [exp]	33.8	0.8790
AT3G55470			Calcium-dependent lipid-bindin...		Lus10040291 [exp]	35.1	0.8838

Compare expression of checked genes

Lus10021064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.