Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06700 629 / 0 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT3G12060 605 / 0 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT1G60790 454 / 6e-154 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT5G49340 426 / 2e-144 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1) AT5G20590 413 / 1e-138 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT3G62390 385 / 5e-128 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT5G19160 321 / 3e-103 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT3G06080 318 / 4e-102 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G06230 303 / 8e-98 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT3G11570 290 / 8e-92 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004159 [exp] 900 / 0 AT5G06700 552 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10013035 [exp] 449 / 1e-151 AT1G60790 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10011932 [exp] 424 / 4e-143 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10027637 [exp] 418 / 8e-141 AT5G20590 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10029126 [exp] 410 / 5e-137 AT1G60790 527 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10037726 [exp] 386 / 2e-128 AT5G49340 435 / 3e-150 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Lus10002430 [exp] 373 / 8e-123 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10034041 [exp] 324 / 2e-104 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10034039 [exp] 311 / 1e-99 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G193900 [exp] 682 / 0 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.016G059300 [exp] 657 / 0 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.001G010900 [exp] 489 / 2e-167 AT5G06700 472 / 5e-161 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.010G043300 [exp] 454 / 7e-154 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.008G108500 [exp] 446 / 7e-152 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.T171301 [exp] 446 / 1e-151 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.006G071500 [exp] 421 / 7e-142 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.018G133000 [exp] 410 / 3e-137 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.002G195800 [exp] 400 / 6e-133 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.008G203900 [exp] 317 / 8e-102 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10021066 pacid=23182358 polypeptide=Lus10021066 locus=Lus10021066.g ID=Lus10021066.BGIv1.0 annot-version=v1.0 ATGGGTATGACTGATCCCATCAAGCATCTATCTCCCCCGCCGCCGACGGACTTCAAGAGCTTACTTTCCCTTCTGAAGACCAAGAGATCTCTGGGTTTCG CCTATGGCTTCATGTTTGCCTTTGTTGTCTTCACCGTCTTCCTTGCTTTCAACCCTTCTCCCAACTCTTCCTCCCCTTGGTTCTTCTCCAACATCTTCGC CGCCACTCCTCCTCCCCCCTCCGCCACCGCTGCCGGTCACGGCGACTCAAATCCCTCTGGATCTCAATTCCCTGCTCTTTACTCCTTTCTATTCCCTAAC AACTCCTCCTCCTCCTCCTCCACTGACGACGGTCGTCAGCCGGAAACTGCCGATGGTTTCTCCACCCTACGGACGGTGAACGTCTCCGACTCCACCGCCG CCGCCGCCGACAGATCTGACTCTAGTTCCGCTTCTTCTTCTTCTCCGCAATCTCGGGTCGAGGAAGTAGAGAAAGAGCAGCAGCCATCTGTCAATAACCA AACGCGAACCGGTGCGGATTCCATTCCTGTACAGCAGCCGGAAGCTCAGTCGAAGGACTCTTCGATAAGCATCGGAAAAAAACCTCCGGCTGCAAATCAA ACTGCGCAGAGTTCGGATGAAGTTCCTACCTTGCAAAAGCCTGCTGTGTCGGCGAATCTGACCGCTGTTACTCCGGCTGAAAGCAATGCAACTTCCGCCG GAATAGTGCAGGCGGAGAAGAAACAGAGCAACGGCGGCGCTTCAAAACAGACGGTGAAACAGGGGATAGATGCGCTGGTGGAGAGTTTGGAAGGCTGCGA TTTCTTCGACGGGGAATGGGTCTCGGATGATTCGTACCCGCTTTACAAACCCGGATCATGTTCGTTCATCGACGAGCAGTTCAATTGCATCCTCAATGGC CGGCCCGACAAGGACTACCAGAAGTACAAGTGGAAGCCCCATGGCTGCACTCTCCCAAGATTGAATGCTGCAAATTTGTTGGATATGTTGAGAGGGAAAC GCCTGGTGTTCGTCGGCGATTCGCTGAACAGAAACATGTGGGAATCCATGGTTTGTATGCTGAAAGGAGCTGCCAAAGATCAGAGCAAGGTCTATGAAGT CAATGGACGGCAGCATTTCCGCGGCGAAGCTACGTATTCCTTCGTGTTTAAAGATTACGATTGCACGGTGGAGTTCTTCGTGACGCCATTCTTGGTTCAG GAATGGGAGACGAAAGACAAGAAAGGATCGGCGAAGGAGACACTCCGGCTCGACTTGATCGGGCAGTCTTCGGAGCAGTATAAGGCTGCCGATTTCATTG TGTTCAATACAGGGCATTGGTGGACTCATGAGAAGACTTCCTTAGGGAAAGATTACTACCAAGAAGGAAGCCATGTGTACCCGGATTTGAACGTGCTCGA AGCGTTCCGAAAAGCGTTGACTACATGGGGGAGATGGGTTGACTCCAATGTCAATCCAAGGAAGAGCATGGTTTTCTTCAGAGGATACTCCGCTTCTCAT TTCAGTGGCGGGCAATGGAACTCAGGCGGGGCATGCGACAACGAGGTTGAGCCAATCAAGAACTCGACGTACCTGACCGAGTACCCGGACAAGATGGTAG TGCTGGAGAAGGTACTGAGAGGGATGAAAACCTCGGTGAAGTACCTGAACGTGACGAGGATGACAGATTACCGGAAAGATGGGCACCCGTCAATGTACAG GAAGCAGAAGCTTTCGGCGGAGGAGAAGCAGAAGCCGTTGCAGTACCAGGACTGCAGCCATTGGTGCCTCCCGGGTGTGCCTGATGCTTGGAATGAGATC CTTTATGCTCAAGTTCTAGTGAACGAGTACAGGAAGAAGCATTCTGTCCAAAAGAGACATAGGTTATAA
AA sequence Show only first row Show all	>Lus10021066 pacid=23182358 polypeptide=Lus10021066 locus=Lus10021066.g ID=Lus10021066.BGIv1.0 annot-version=v1.0 MGMTDPIKHLSPPPPTDFKSLLSLLKTKRSLGFAYGFMFAFVVFTVFLAFNPSPNSSSPWFFSNIFAATPPPPSATAAGHGDSNPSGSQFPALYSFLFPN NSSSSSSTDDGRQPETADGFSTLRTVNVSDSTAAAADRSDSSSASSSSPQSRVEEVEKEQQPSVNNQTRTGADSIPVQQPEAQSKDSSISIGKKPPAANQ TAQSSDEVPTLQKPAVSANLTAVTPAESNATSAGIVQAEKKQSNGGASKQTVKQGIDALVESLEGCDFFDGEWVSDDSYPLYKPGSCSFIDEQFNCILNG RPDKDYQKYKWKPHGCTLPRLNAANLLDMLRGKRLVFVGDSLNRNMWESMVCMLKGAAKDQSKVYEVNGRQHFRGEATYSFVFKDYDCTVEFFVTPFLVQ EWETKDKKGSAKETLRLDLIGQSSEQYKAADFIVFNTGHWWTHEKTSLGKDYYQEGSHVYPDLNVLEAFRKALTTWGRWVDSNVNPRKSMVFFRGYSASH FSGGQWNSGGACDNEVEPIKNSTYLTEYPDKMVVLEKVLRGMKTSVKYLNVTRMTDYRKDGHPSMYRKQKLSAEEKQKPLQYQDCSHWCLPGVPDAWNEI LYAQVLVNEYRKKHSVQKRHRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10021066 [exp]	0	1
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Lus10004469 [exp]	1.0	0.9223
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Lus10031685 [exp]	1.4	0.8830
AT4G08150	HD	BP1, KNAT1	BREVIPEDICELLUS 1, BREVIPEDICE...		Lus10028244 [exp]	2.8	0.8803
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10043297 [exp]	3.2	0.8717
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Lus10027651 [exp]	4.0	0.8657
AT5G49690			UDP-Glycosyltransferase superf...		Lus10028865 [exp]	4.6	0.8809
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10026595 [exp]	6.7	0.8650
					Lus10016421 [exp]	6.9	0.8583
AT1G01540			Protein kinase superfamily pro...		Lus10007919 [exp]	8.9	0.8441
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10027195 [exp]	9.8	0.8473

Compare expression of checked genes

Lus10021066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.