Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06690 213 / 2e-70 WCRKC1 WCRKC thioredoxin 1 (.1.2) AT5G04260 146 / 1e-44 WCRKC2 WCRKC thioredoxin 2 (.1) AT4G03520 61 / 1e-11 ATHM2 Thioredoxin superfamily protein (.1.2) AT3G15360 61 / 1e-11 ATHM4, ATM4, TRX-M4 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) AT1G19730 59 / 2e-11 ATTRX4, ATH4 thioredoxin H-type 4, Thioredoxin superfamily protein (.1) AT1G03680 59 / 6e-11 ATHM1, ATM1, TRX-M1 ARABIDOPSIS THIOREDOXIN M-TYPE 1, thioredoxin M-type 1 (.1) AT5G39950 54 / 2e-09 ATTRXH2, ATTRX2, ATH2 Arabidopsis thioredoxin h2, thioredoxin 2 (.1) AT1G45145 51 / 2e-08 LIV1, ATTRX5, ATH5 LOCUS OF INSENSITIVITY TO VICTORIN 1, thioredoxin H-type 5 (.1) AT5G42980 50 / 2e-08 ATTRXH3, ATTRX3, ATH3 THIOREDOXIN H3, thioredoxin H-type 3, thioredoxin 3 (.1) AT1G76760 51 / 5e-08 ATY1, TRX-Y1 thioredoxin Y1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017244 [exp] 260 / 2e-89 AT5G06690 156 / 2e-48 WCRKC thioredoxin 1 (.1.2) Lus10038703 [exp] 137 / 3e-40 AT5G04260 191 / 2e-61 WCRKC thioredoxin 2 (.1) Lus10037975 [exp] 120 / 1e-35 AT5G04260 149 / 3e-47 WCRKC thioredoxin 2 (.1) Lus10029755 [exp] 56 / 7e-10 AT3G15360 162 / 3e-51 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Lus10029752 [exp] 56 / 1e-09 AT3G15360 165 / 3e-52 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Lus10042784 [exp] 56 / 1e-09 AT3G15360 165 / 4e-52 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Lus10013827 [exp] 54 / 2e-09 AT3G53220 172 / 2e-56 Thioredoxin superfamily protein (.1) Lus10005258 [exp] 53 / 6e-09 AT5G39950 189 / 4e-63 Arabidopsis thioredoxin h2, thioredoxin 2 (.1) Lus10030666 [exp] 52 / 2e-08 AT5G39950 189 / 3e-63 Arabidopsis thioredoxin h2, thioredoxin 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G059500 [exp] 215 / 1e-71 AT5G06690 212 / 4e-70 WCRKC thioredoxin 1 (.1.2) Potri.010G225701 [exp] 150 / 7e-46 AT5G04260 204 / 3e-67 WCRKC thioredoxin 2 (.1) Potri.008G036400 [exp] 149 / 1e-45 AT5G04260 216 / 8e-72 WCRKC thioredoxin 2 (.1) Potri.001G401500 [exp] 59 / 8e-11 AT3G15360 171 / 2e-54 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Potri.019G111200 [exp] 59 / 8e-11 AT4G03520 172 / 9e-55 Thioredoxin superfamily protein (.1.2) Potri.013G132200 [exp] 57 / 3e-10 AT4G03520 173 / 4e-55 Thioredoxin superfamily protein (.1.2) Potri.017G076700 [exp] 56 / 5e-10 AT5G39950 168 / 7e-55 Arabidopsis thioredoxin h2, thioredoxin 2 (.1) Potri.002G073000 [exp] 55 / 2e-09 AT4G03520 152 / 6e-47 Thioredoxin superfamily protein (.1.2) Potri.005G186800 [exp] 54 / 3e-09 AT4G03520 152 / 3e-47 Thioredoxin superfamily protein (.1.2) Potri.001G159000 [exp] 54 / 5e-09 AT2G35010 162 / 7e-51 thioredoxin O1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10021067 pacid=23182297 polypeptide=Lus10021067 locus=Lus10021067.g ID=Lus10021067.BGIv1.0 annot-version=v1.0 ATGGCTGCAACTGCTGCTTTGACGACGGCGTGTTCTCCCATAATCCCCTCTCGAGAGTTTAACAGCAAATACCAACATCAACAACAACTGGGATTAAGCA GCTGCTCCCTCTTCAGCACCGCTTCCTCTTCTTCTTCTTCGTATACTGGGAGAAGAAATAACAGAGAGCATTATCAGGGGAGGAAAGTTTCCGACTTTAG AGCTTTCGGGTTCTGGCCCGATTTGAGATCCAAACCCACTTCCGTCGACATGGAACCCATCAACGATTCGGAGGAGCTGGATCAGATCCTTCTCCACGCT AAGGAGCTCGCTCAACCTGTCGTCATCGACTGGATGGCGTCGTGGTGCAGGAAGTGCATATACTTAAAGCCTAAGCTGGAGAAATTAGCTGCTGAATTCG ACGACAAAGCGAAGTTCTACTGCGTGGATGTGAACAAGGTGCCTCAGGCTCTGGTGAAGCGTGGCAACATATCTAAAATGCCGACGATTCAGGTGTGGAA AGACGGGGAGATGAAGGAGGAGGTGATTGGAGGGCACAAAGGGTGGCTGGTGGTTGAAGAGGTTCAAGCTATGATCCACAAGTTCTTGTGA
AA sequence Show only first row Show all	>Lus10021067 pacid=23182297 polypeptide=Lus10021067 locus=Lus10021067.g ID=Lus10021067.BGIv1.0 annot-version=v1.0 MAATAALTTACSPIIPSREFNSKYQHQQQLGLSSCSLFSTASSSSSSYTGRRNNREHYQGRKVSDFRAFGFWPDLRSKPTSVDMEPINDSEELDQILLHA KELAQPVVIDWMASWCRKCIYLKPKLEKLAAEFDDKAKFYCVDVNKVPQALVKRGNISKMPTIQVWKDGEMKEEVIGGHKGWLVVEEVQAMIHKFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06690		WCRKC1	WCRKC thioredoxin 1 (.1.2)		Lus10021067 [exp]	0	1
AT3G52070			unknown protein		Lus10029504 [exp]	1.4	0.9280
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10008768 [exp]	1.4	0.9286
AT5G52780			Protein of unknown function (D...		Lus10038849 [exp]	3.2	0.8587
AT5G48250	CO	COL10	B-box type zinc finger protein...		Lus10036419 [exp]	4.0	0.8657
AT5G59750			DHBP synthase RibB-like alpha/...		Lus10005882 [exp]	7.5	0.8145
AT5G45360			F-box family protein (.1)		Lus10007767 [exp]	9.9	0.8059
AT4G25170			Uncharacterised conserved prot...		Lus10009654 [exp]	11.2	0.8876
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10040192 [exp]	12.0	0.8401
					Lus10027443 [exp]	12.4	0.8123
AT2G47400		CP12-1	CP12 domain-containing protein...		Lus10010006 [exp]	13.2	0.8583

Compare expression of checked genes

Lus10021067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.