Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13410 521 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G29230 367 / 1e-120 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 369 / 7e-120 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 360 / 3e-116 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G44880 352 / 2e-115 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G13600 347 / 6e-112 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 348 / 2e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 343 / 6e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G37570 330 / 8e-107 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G74630 328 / 5e-105 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021068 [exp] 1046 / 0 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017243 [exp] 1000 / 0 AT1G13410 539 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 368 / 1e-119 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 359 / 5e-116 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014113 [exp] 352 / 1e-114 AT3G29230 767 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020743 [exp] 353 / 2e-114 AT1G04840 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039974 [exp] 349 / 3e-114 AT1G06150 612 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10009269 [exp] 351 / 9e-114 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019797 [exp] 349 / 1e-113 AT3G29230 768 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G121400 [exp] 753 / 0 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 400 / 6e-132 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G125500 [exp] 381 / 4e-126 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G258766 [exp] 378 / 2e-125 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.018G040100 [exp] 383 / 3e-125 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G087100 [exp] 363 / 7e-119 AT3G29230 368 / 1e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 364 / 5e-118 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G217900 [exp] 358 / 3e-116 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.012G140400 [exp] 349 / 3e-114 AT3G29230 398 / 2e-132 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 352 / 7e-114 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10021069 pacid=23182436 polypeptide=Lus10021069 locus=Lus10021069.g ID=Lus10021069.BGIv1.0 annot-version=v1.0 ATGTTTAGTGGCTATTATCAAAACTCTTTACACCGGGAAGTTATTTTGGCCTTCAGTCGGATGAAGAGTTTGGATATATTTCCCAACAGTTACAGTTTCC CTGTTGTCCTGAAATCCTGTGTAAAGCTCAATGCTCTGAGGGAAGGCGAAGAGCTGCACTGCATCGTGATAAAGACTGGATTCAAATCAAACCCATTCGT TGGAACTACGTTGATTGAGATGTACTCGAGCGTGAATCTGATCGAACCAGCGTACCGGGTGTTCCGTGAGATGCTGGAAAGAAATGTCGTAGCCTGGACT GCAATGATCAACGGCTACATTTCCTGCCATGAGTTGAGTTCGGCAAGGCAGCTCTTTGACTTGGCTCCTGACCGTGATGTCGTGCTCTGGAACACCATGG TTTCTGGCTACATTGGGGTAGGAGATATGGTAAGCGCCAGAGAGCTTTTTGATAAGATGAGTAAAAAGGATGTCATGTCTTGGAATACTGTATTGAATGG GTACGCAAACAACGGCGATTTTGATGCCTGTGAGAGATTCTTCGAGGAAATGCCGGAAAGAAACGTTTTTTCGTGGAATGGACTGCTTGGTTGTGTTGCT CATAACGGATGCTTTCCTAAGGTGATTGCTACTTTCAAGAGAATGCTTGCCGAGAAGAATGTCACTCCCAATGATGCAACATTCGTGACAGTGTTATCCG CTTGTGCAAGGTTAGGAGCTCTGGATCTAGGCAGGTGGATTCATGTTAATGCAAAGGCTAGTGGATACAACGAAAATCTCTACGTTGGGAATGCTCTGAT CGACATGTATGCAAAATGTGGAGTCATGGAAAGTGCAGTGGAAGTATTCAGAAGCATGAAAGGTAAGGATTTGATAAGCTGGAATACTATAATCTGTGGA TTAGCAAGCCATGGTCATGGATTGGATGCCTTGAATATGTTCGCCGAAATGAAGAATGCTGGAGAAAGGCCGGATGCAATCACTTTCATAGGAATCATGT CGGGTTGTGTGCACATGGGTTTCGTCCAGGGCGGGTTTTCGTATTTCCAGTCGATGATTGAGGACTACTCGATAGTGCCTCGAATCGAGCATTACGGATG CATGGTTGATTTGCTAGCAAGAGCTGGTCTTTTAGCTCAGGCTGTGGATTTCATCTTCGGAATGCCTATAGAAGCTGATGCTATCATGTGGGCGACTCTG CTTGCGGCTTGTAGGGTGTACAAAAATGTCGAGTTTGCTGAGCTGGCGCTCGGGAAGCTGGTGGAATTCGATTCGAGGAATCCGGCAAACTACGTGATGC TGTCGAATGTTTACGGCGATGTTGGTAGGTGGAAAGATCTGGCCAGACTGAAAGTCGCGATGAGGGATACCGGGTTCAAGAAGATGCCCGGGAGTAGCTC GATTGAGGTCGATGATGTTGTCTCAGAGTTCTATTCGCTGGACGAGAGGCACGCTGACTCGCAGCGGATTTATGAAGCCTTGAAGGGATTGACTAGGTTG TCGAGATTGTACTGTTGTGTTCCTGCAAGAGACGCTGATATTTATCTAAAATGA
AA sequence Show only first row Show all	>Lus10021069 pacid=23182436 polypeptide=Lus10021069 locus=Lus10021069.g ID=Lus10021069.BGIv1.0 annot-version=v1.0 MFSGYYQNSLHREVILAFSRMKSLDIFPNSYSFPVVLKSCVKLNALREGEELHCIVIKTGFKSNPFVGTTLIEMYSSVNLIEPAYRVFREMLERNVVAWT AMINGYISCHELSSARQLFDLAPDRDVVLWNTMVSGYIGVGDMVSARELFDKMSKKDVMSWNTVLNGYANNGDFDACERFFEEMPERNVFSWNGLLGCVA HNGCFPKVIATFKRMLAEKNVTPNDATFVTVLSACARLGALDLGRWIHVNAKASGYNENLYVGNALIDMYAKCGVMESAVEVFRSMKGKDLISWNTIICG LASHGHGLDALNMFAEMKNAGERPDAITFIGIMSGCVHMGFVQGGFSYFQSMIEDYSIVPRIEHYGCMVDLLARAGLLAQAVDFIFGMPIEADAIMWATL LAACRVYKNVEFAELALGKLVEFDSRNPANYVMLSNVYGDVGRWKDLARLKVAMRDTGFKKMPGSSSIEVDDVVSEFYSLDERHADSQRIYEALKGLTRL SRLYCCVPARDADIYLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10021069 [exp]	0	1
AT2G37320			Tetratricopeptide repeat (TPR)...		Lus10009070 [exp]	1.0	0.9282
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10021068 [exp]	1.7	0.8716
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10027455 [exp]	2.0	0.8607
AT1G62260		MEF9	mitochondrial editing factor 9...		Lus10012514 [exp]	2.0	0.8878
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10027365 [exp]	2.6	0.8548
AT5G04780			Pentatricopeptide repeat (PPR)...		Lus10021649 [exp]	4.0	0.8537
AT2G43770			Transducin/WD40 repeat-like su...		Lus10002211 [exp]	4.7	0.8486
AT1G03540			Pentatricopeptide repeat (PPR-...		Lus10033713 [exp]	5.0	0.8574
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10003857 [exp]	6.3	0.8262
AT2G36730			Pentatricopeptide repeat (PPR)...		Lus10004373 [exp]	6.7	0.8520

Compare expression of checked genes

Lus10021069 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.