Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41970 520 / 0 Protein kinase superfamily protein (.1) AT3G59350 444 / 1e-156 Protein kinase superfamily protein (.1.2.3) AT1G06700 442 / 3e-156 Protein kinase superfamily protein (.1.2) AT2G30740 441 / 1e-155 Protein kinase superfamily protein (.1) AT2G43230 439 / 6e-154 Protein kinase superfamily protein (.1.2) AT2G47060 424 / 8e-149 PTI1-4 Pto-interacting 1-4, Protein kinase superfamily protein (.1.2.3.4.5) AT3G17410 422 / 3e-148 Protein kinase superfamily protein (.1) AT3G62220 417 / 7e-146 Protein kinase superfamily protein (.1) AT2G30730 409 / 4e-143 Protein kinase superfamily protein (.1) AT1G48210 402 / 4e-140 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017242 [exp] 650 / 0 AT2G41970 560 / 0.0 Protein kinase superfamily protein (.1) Lus10016247 [exp] 598 / 0 AT2G41970 563 / 0.0 Protein kinase superfamily protein (.1) Lus10029295 [exp] 597 / 0 AT2G41970 562 / 0.0 Protein kinase superfamily protein (.1) Lus10025496 [exp] 447 / 1e-157 AT3G59350 610 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10026706 [exp] 446 / 1e-157 AT3G59350 613 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10025498 [exp] 448 / 2e-157 AT3G59350 630 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10026708 [exp] 447 / 7e-157 AT3G59350 625 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10038042 [exp] 440 / 4e-155 AT3G62220 588 / 0.0 Protein kinase superfamily protein (.1) Lus10009983 [exp] 439 / 9e-155 AT3G62220 586 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G059600 [exp] 555 / 0 AT2G41970 600 / 0.0 Protein kinase superfamily protein (.1) Potri.006G194000 [exp] 547 / 0 AT2G41970 586 / 0.0 Protein kinase superfamily protein (.1) Potri.017G036300 [exp] 450 / 2e-158 AT3G59350 632 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.007G124000 [exp] 449 / 2e-158 AT2G43230 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G188600 [exp] 431 / 2e-151 AT3G62220 595 / 0.0 Protein kinase superfamily protein (.1) Potri.014G114200 [exp] 425 / 3e-149 AT3G62220 577 / 0.0 Protein kinase superfamily protein (.1) Potri.010G001500 [exp] 394 / 6e-137 AT1G48210 494 / 3e-176 Protein kinase superfamily protein (.1.2) Potri.013G025700 [exp] 253 / 8e-81 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.014G194300 [exp] 257 / 6e-79 AT2G20300 966 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.002G254600 [exp] 255 / 3e-78 AT2G20300 947 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10021070 pacid=23182338 polypeptide=Lus10021070 locus=Lus10021070.g ID=Lus10021070.BGIv1.0 annot-version=v1.0 ATGTTCTGCTGTGGAGATGCAGAGGAGGAACAACCACCTGCTAATCAATACACTGCCCCTCCCAAAGGCAGTCCTTATGGCGCAATGGACCAAAAGACAG CGCCAAGAGGCGTACCACAGAAGATGTTACCAATTGAGATACCAGAAATTTCCTTGGAAGAGCTCAACAAATTAACGGACAGCTTCGGACAGAAGGCGTT GATCGGAGAAGGCTCCTATGGCCGTGTCTTCTACGCCACGTTAAGAGACGGGGTCCCTGCTGCAATCAAGAAGCTAGATACCAACACTTCCCAAGAACCC GACACCGATTTCAACGCACAGCTATCGGTGGTTTCGAGATTGAAAAACGAACACTTTCTGGAGCTAATTGGGTATTGTATGGAGGCAAACAACAGGATCT TGGTCTATCAGTATGCCTCCATGGGTTCATTACATGATGTGTTACATGGGAGGAAAGGGGTACAAGGGGCTGAGCCAGGTCCGGCGCTGAATTGGAGCCA AAGAGCTAAGATAGCATTCGGAGCAGCCAAAGGGTTAGAGTTCCTACACGAGAAATGTCAACCGTCTATAGTCCATCGGGATGTTCGGTCGAGCAATGTT CTTCTCTTCGACGATTTCAGCTCCAAGATTGCCGACTTCAACATCTCCAGTGCGACCTCCGACACCGCAGCGCGATTGCATTCGACTCGTGTCTTGGGAA CATTCGGATACCACGCTCCCGAGTACGCTATGACGGGACAAATAACTCAGAAGAGCGACGTCTACAGTTTTGGCGTGGTCTTACTAGAGCTTTTGACCGG CAGAAAGCCTGTAGACCATACGATGCCTAAAGGCCAACAGAGTCTTGTTACATGGGCTACACCGAGATTGAGCGAAGACAAAGTAAAGCAATGTGTGGAT CCCAAGCTGAACAATGAGTACCCACCAAAAGCAGTTGCCAAGTTAGCAGCAGTAGCAGCACTTTGTGTTCAGTACGAGGCGGACTTTAGGCCGAATATGA CGATCGTGGTGAAGGCCCTTCAGCCGTTGCTCAACTCGAAACCGGCTGGTCCAGGGCCTACTCCTCCTGCTTGA
AA sequence Show only first row Show all	>Lus10021070 pacid=23182338 polypeptide=Lus10021070 locus=Lus10021070.g ID=Lus10021070.BGIv1.0 annot-version=v1.0 MFCCGDAEEEQPPANQYTAPPKGSPYGAMDQKTAPRGVPQKMLPIEIPEISLEELNKLTDSFGQKALIGEGSYGRVFYATLRDGVPAAIKKLDTNTSQEP DTDFNAQLSVVSRLKNEHFLELIGYCMEANNRILVYQYASMGSLHDVLHGRKGVQGAEPGPALNWSQRAKIAFGAAKGLEFLHEKCQPSIVHRDVRSSNV LLFDDFSSKIADFNISSATSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVD PKLNNEYPPKAVAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNSKPAGPGPTPPA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41970			Protein kinase superfamily pro...		Lus10021070 [exp]	0	1
AT5G59100			Subtilisin-like serine endopep...		Lus10040751 [exp]	1.0	0.7207
AT1G56260		MDO1	MERISTEM DISORGANIZATION 1, un...		Lus10029875 [exp]	9.9	0.6366
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10011976 [exp]	11.9	0.6988
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10014439 [exp]	13.3	0.6813
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10009231 [exp]	24.8	0.6371
AT5G63440			Protein of unknown function (D...		Lus10022455 [exp]	24.9	0.6160
AT3G27030			unknown protein		Lus10041551 [exp]	27.8	0.6462
					Lus10021106 [exp]	38.2	0.6168
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Lus10017541 [exp]	39.9	0.6394
AT3G07070			Protein kinase superfamily pro...		Lus10022799 [exp]	45.4	0.5980

Compare expression of checked genes

Lus10021070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.