Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12040 341 / 3e-119 DNA-3-methyladenine glycosylase (MAG) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017241 [exp] 493 / 3e-179 AT3G12040 345 / 1e-120 DNA-3-methyladenine glycosylase (MAG) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G060000 [exp] 360 / 8e-127 AT3G12040 365 / 5e-129 DNA-3-methyladenine glycosylase (MAG) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02245 [flax] [poplar] Pur_DNA_glyco Methylpurine-DNA glycosylase (MPG)
Representative CDS sequence Show only first row Show all	>Lus10021071 pacid=23182332 polypeptide=Lus10021071 locus=Lus10021071.g ID=Lus10021071.BGIv1.0 annot-version=v1.0 ATGAAGACGACGACTCCCCATCGAGAAACGACAGCCTGGAAAGTGAGGAAATACACCAAGTCTCTCAAACTACGGAAAGGAACCGAGGCTGTAGCTACAT CAGCTGGATTAACGGCTAAATCCGGAGGCAGAGGCAAGCGCCAGCGGTCTCAACCGGAATCCATGACTCTCTCGATTCCATTTTCACCCTCCCACAATCA TTCCATCTTGGCTCCGGAGTTCTTCGAGGTCGACGCTCTCGAATTAGCCCCTCGATTGTTAGGCAAGCTCCTCCGCAGAGATGACGTCATTCTTCAGATT ACTGAGGCAGAAGCTTACAGAGAGAATGATTCAGCTTGCCATGGTAGATTTGGCGTCACACCGAGAACAGCTCCAGTGTTTGGACCAGGAGGCCATGCCT ATGTTTACCTGTGCTACGGGCTGCACACAATGCTGAATGTTGTTGCTGATAAGGAAGGAGTTGGAGCTGCTGTTCTGATACGTTCTTGTGCTCCTGTTAG TGGCTTGGACACGATTCAGTGGCGTCGAGGTCAGGAGACGGAGAAGCCTGTGCTCCTCACTGGTCCTGGTAAGATTGGACAAGCACTGGGGATTTCAACA TATTGGTCTAACCACCCCCTTTATTCTCCTGGCGGTCTGGAAATGTTGGATGCACCAGAGCCAGAGAAGATACTGGTCGGTCCACGCGTCGGCATCAACT ATGCGCTGCCTGAACATGTCAACGCATTATGGAGATTCGCCGTAGCTGGTAGCCCGTGGATAAGTGCTCCGAGAAACACCCTAAGGTCTCCCTGA
AA sequence Show only first row Show all	>Lus10021071 pacid=23182332 polypeptide=Lus10021071 locus=Lus10021071.g ID=Lus10021071.BGIv1.0 annot-version=v1.0 MKTTTPHRETTAWKVRKYTKSLKLRKGTEAVATSAGLTAKSGGRGKRQRSQPESMTLSIPFSPSHNHSILAPEFFEVDALELAPRLLGKLLRRDDVILQI TEAEAYRENDSACHGRFGVTPRTAPVFGPGGHAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLDTIQWRRGQETEKPVLLTGPGKIGQALGIST YWSNHPLYSPGGLEMLDAPEPEKILVGPRVGINYALPEHVNALWRFAVAGSPWISAPRNTLRSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12040			DNA-3-methyladenine glycosylas...		Lus10021071 [exp]	0	1
AT3G01330	E2F_DP	E2FF, E2L2, DEL...	E2F-LIKE 2, DP-E2F-like protei...		Lus10039455 [exp]	6.4	0.7322
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10016768 [exp]	9.5	0.6944
AT5G65380			MATE efflux family protein (.1...		Lus10020951 [exp]	22.6	0.6560
AT4G30870		ATMUS81	ARABIDOPSIS THALIANA MMS AND U...		Lus10039566 [exp]	30.9	0.6910
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10028781 [exp]	37.1	0.6753
AT3G56250			unknown protein		Lus10030552 [exp]	38.3	0.6629
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10040585 [exp]	38.7	0.6468
AT1G79440		ENF1, SSADH1, A...	SUCCINIC SEMIALDEHYDE DEHYDROG...		Lus10002132 [exp]	50.0	0.6144
AT3G63240			DNAse I-like superfamily prote...		Lus10022074 [exp]	57.4	0.6468
AT5G45760			Transducin/WD40 repeat-like su...		Lus10007297 [exp]	58.5	0.6728

Compare expression of checked genes

Lus10021071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.