Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58050 883 / 0 unknown protein AT2G41960 680 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016244 [exp] 1174 / 0 AT3G58050 851 / 0.0 unknown protein Lus10029299 [exp] 1154 / 0 AT3G58050 820 / 0.0 unknown protein Lus10017239 [exp] 967 / 0 AT3G58050 768 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G060200 [exp] 1196 / 0 AT3G58050 1131 / 0.0 unknown protein Potri.006G194500 [exp] 1155 / 0 AT3G58050 1083 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021073 pacid=23182434 polypeptide=Lus10021073 locus=Lus10021073.g ID=Lus10021073.BGIv1.0 annot-version=v1.0 ATGCCGGGACTACCGCAGGAGAATGAGCAATTCAGTAATGCTTCGTCTGCGGTGTACTCCGTTTCTGGCAATGGATTTTGGTCCAAACATAGCGATGTCG TCGGATACAATCAGCTCCAGAAGTTCTGGAGTGAACTGTCGATTCCTGCTAGGCAGAAGCTGCTTAGAATAGACAAGCATACTTTGTTTGAGCAAGCTCG TAAGAATATGTACTGTTCTAGGTGCAATGGGCTATTGCTTGAAGGGTTTATGCAGATTGTCGTCCATAGGAAGTCATTGCAGCAGGATGTAGGCGCAAAC GTGCCCTCCCACAGAATTGGAGCTTCAAGAAATCAAACGGATGGTGTGGCAAATATGATAACTGGGTGCCAAGATGAAATGCAAGATCCAGGTGTACATC CTTGGGGCGGTCTAACAACAACACGGGAGGGATCCTTAACGCTTCTGGATTGTTATTTATGTTCAAAATCTCTTACAGGACTTCAAAATGTCTTTGATAG TGCGCGGGCACGTGAGCGGGAAAGGGAGCTCCTCTATCCGGATGCTTGTGGTGGGGGAGGTCGGGGTTGGATAAGTCAAGGGATCGCAAGTTATAGTAGA GGCCACGGAACTAGAGAAACATGCGCGCTACACAATGCCAGGCTTTCATGTGATACACTTGTGGATTTCTGGTCAGCACTAGGAGAAGAGACACGACAGT CTCTTCTTAGGATGAAGGAAGAGGACTTCATTGAGCGGCTCATGTACAGATTTGACAACAAGAGATTCTGCAGAGACTGTAGGAGGAATGTTATCCGCGA ATTCAAGGAGCTGAAGGAACTGAAGCGTATGCGGAGAAAAACGCGGTGCACTAGTTGGTTTTGCGCTGCAGATACTTCTTTTCAATATGAGGTGTCAGAT GAGATGGTCCAAGCTGATTGGCACCAAACTTTTGCAGATTCTGTCGGGATGTACCATCACTTTGAATGGGCTATTGGAACAGGAGAAGGGAAGTCTGACA TTCTAGAATATGAAAATGTAGGCATGAGTGAGAGCGTGCAAGTCGATGGATTGGATCTTAGTGATTTGACAGCATGCTTTATCTCTCTGAGGGCTTGGAA AATGGATGGCCGGTGCACAGAGTTATCTGTGAAAGCTCATGCATTGAAGGGTCAACAGTGCGTTCATTGCAGGTTAATAGTTGGTGATGGGTTTGTTACA ATTACTAGAGGGGATAGCATCAGAAGTTTTTTTGAGCATGCGGAAGAGGCCGAGGAAGAAGAGGATGATGACTCCATGGAGAAGGACGGAAATGAGCTTG ATGGAGAATGCTCTCGTCCCCAAAAGCATGCGAAGAGTCCTGAACTTGCCCGAGAGTTTCTTCTAGATGCAGCTACTGTTGAAAAGGCTTTCAGAGAGGG AACTGCACGTCAGAATGCTCACAGCATTTTTGTCTGCCTTGCACTAAACCTGCTGGAAGAACGAATCCATGTTGCATGTAAAGAAATCATTACCTTGGAA AAGCAGATGAAATTGCTTGAAGAAGAAGAAAAGGAAAAGCGTGAAGAAGAAGAGCGCAAGGAGAGGAGAAGATTAAAAGAAAGAGAAAAGAAGCTTCGAA GAAAAGAGAGGTTAAAAGGAAAGGAAAGGGATAAAGATAAGAATAGTTGTGATTCAAATGATGCTCCTCTTCTTATTGATGCAGCTAAGGGTGAATCATC ACTCAGCGATGAGCTCAATAATGGTGTCAGCTGTAGGGATTCAGTAAGCGAAGCAGGGGATAACTCTCTGTCCAGTCCTGGATCACCTAATACTGAGGAA CAGTATTCAAATGGGCGCACCACAATCATAGAGCAAAATGATTCATATGACTGTCTGGATCATGAGGTCATGGATGTGAAAGATGGGAGCGATTCGTTTA TATTTGAGCAATCAAAATCATCTCGCCGGAGATTGAAATTGTGGAAAGAGGTTCAGATGGATTCATCTTTACGGTGTTCCGATAGAAGTGGGCCTGTGGC TAGTAGATCTTGCTCAAGGAATCGTGGTGATAATATCGAGAATTTTTCAAGGAGCACCAATGGTTCAAATAGACAATCAAGGATAAGTGCACCAAAGTCT ACTAATCGAACTTGTGGTCCAAGGTTTGTTGAGAAGTTTAATAGTCCTAACAGCAGGATTACTGAGAGGCAGGACTCGCATTCTTGCAGCTGTATTCAAA CTAATCAATACAGGACAAAGGTTGGAAGAGATGGTCAGTGTGTCTGTAAGCTGGAACCTGAAGTAGAGATGCGCAAGCAATTTTATCACGGTAACAAGCA CGTTCAAGCTGATTACACACATGAAGGCTGTGGAAGGCCCAGAAACAAAGTTTTCACTGCAAATTCTTCTGTTCCTCATGTGAAGAAAGTATGGGAGCCT TTGGAATCTCAGAAGAAGTATCCTAGGAGTAATTCAGATAGTGATGTCACCTTGAGATCATCCATCTTGAAAGGTGGAGTAGCTTCTGACAACGATTTTT CCAAGTCATCTGGTGGTAACTGTTTCGGAGTTCAAGGGAACTCCGATGATACCAATGGTAATGACTGCAAATCGAATGATGCTATAGATTCTAGTGCTGG GGCAGAGGAAGGGTTCCAGGATCCGGGTAGTAGTGTGGCAGTGAAGGGCTCTCATTACGAAGAACTCAATTCAAATCCATCCCCTCCGAATGGCTCAACA TCTACTGCTACGTCCAATCCCAGCTCGATTAGTGCCTCGAATTCTGATAATGGCTCTTGTGTGAGTGAAGGAGATAGCAACACAGCCTCTTCAAATCACA GAAACCTGGAATCGTCTTCCACTTCGGACTCTGAAGATGCCAGCCAGCAATCAGAAGGAAGAGAAACTTCACTGTGCAATCAGAACAGTTTCTCCGAATC TCATGATCCAGGAGTTCAGAATAAACCGGGCACAACCAATGGGCAACCTCTTAATGGTATGAAGTTCTCGGGAGTTCCACGAGACGGTCTAAAAGCAAGC ATTACTGCTACTACTACTACTACTACCAACAAAGGAGTTCACAATGGTAGTGCAGGTCCTCAACACCAAAGCACGTTTACCCCACTGCACAACCAGAACT TACAGTATCCAGTAGTTCAAGCTCCTTCAACAATAAGTTGCTATCATCAGAATCCTGTTTCTTGGCCAGCCGCTGCACCAGCAATGCCCTTTCACCAACC CAACCACTATTTATACTCCGGTCCAGTAGGGTACATGCCCTATACTCCAATGCAGCATTTGACTACTCCCGTGTTCAATTCGAGCCCACTACCTAAAGCT TACCATCCAAAGGGTTTTGGTACCGAGCCGCAGCAGACGTGCAGAGTGCAGGAACCGGTCCACACAGAGAAAAGGCCTCCAGGTGGTAAGATCGACAGCT TCGCAAAGCTGCACTTGGAGAACAGCGATTTCTCGCTGTTCCAATTCGGATGGCCTCCGTCTGGAGATGTTATGTCGAAGGTCTCGGCAGCGGATCAGAT CGGAAACTATACTGAACAGAATAAGAGGGAGACGATCGGGGAAGAGTACAACTTGTTTGCGTCGAGTCACGGCCTGAAGTTCTCGTTCTTCTAA
AA sequence Show only first row Show all	>Lus10021073 pacid=23182434 polypeptide=Lus10021073 locus=Lus10021073.g ID=Lus10021073.BGIv1.0 annot-version=v1.0 MPGLPQENEQFSNASSAVYSVSGNGFWSKHSDVVGYNQLQKFWSELSIPARQKLLRIDKHTLFEQARKNMYCSRCNGLLLEGFMQIVVHRKSLQQDVGAN VPSHRIGASRNQTDGVANMITGCQDEMQDPGVHPWGGLTTTREGSLTLLDCYLCSKSLTGLQNVFDSARARERERELLYPDACGGGGRGWISQGIASYSR GHGTRETCALHNARLSCDTLVDFWSALGEETRQSLLRMKEEDFIERLMYRFDNKRFCRDCRRNVIREFKELKELKRMRRKTRCTSWFCAADTSFQYEVSD EMVQADWHQTFADSVGMYHHFEWAIGTGEGKSDILEYENVGMSESVQVDGLDLSDLTACFISLRAWKMDGRCTELSVKAHALKGQQCVHCRLIVGDGFVT ITRGDSIRSFFEHAEEAEEEEDDDSMEKDGNELDGECSRPQKHAKSPELAREFLLDAATVEKAFREGTARQNAHSIFVCLALNLLEERIHVACKEIITLE KQMKLLEEEEKEKREEEERKERRRLKEREKKLRRKERLKGKERDKDKNSCDSNDAPLLIDAAKGESSLSDELNNGVSCRDSVSEAGDNSLSSPGSPNTEE QYSNGRTTIIEQNDSYDCLDHEVMDVKDGSDSFIFEQSKSSRRRLKLWKEVQMDSSLRCSDRSGPVASRSCSRNRGDNIENFSRSTNGSNRQSRISAPKS TNRTCGPRFVEKFNSPNSRITERQDSHSCSCIQTNQYRTKVGRDGQCVCKLEPEVEMRKQFYHGNKHVQADYTHEGCGRPRNKVFTANSSVPHVKKVWEP LESQKKYPRSNSDSDVTLRSSILKGGVASDNDFSKSSGGNCFGVQGNSDDTNGNDCKSNDAIDSSAGAEEGFQDPGSSVAVKGSHYEELNSNPSPPNGST STATSNPSSISASNSDNGSCVSEGDSNTASSNHRNLESSSTSDSEDASQQSEGRETSLCNQNSFSESHDPGVQNKPGTTNGQPLNGMKFSGVPRDGLKAS ITATTTTTTNKGVHNGSAGPQHQSTFTPLHNQNLQYPVVQAPSTISCYHQNPVSWPAAAPAMPFHQPNHYLYSGPVGYMPYTPMQHLTTPVFNSSPLPKA YHPKGFGTEPQQTCRVQEPVHTEKRPPGGKIDSFAKLHLENSDFSLFQFGWPPSGDVMSKVSAADQIGNYTEQNKRETIGEEYNLFASSHGLKFSFF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58050			unknown protein		Lus10021073 [exp]	0	1
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10036999 [exp]	1.0	0.9245
AT2G04620			Cation efflux family protein (...		Lus10013358 [exp]	2.2	0.8914
AT3G13772		AtTMN7	transmembrane nine 7 (.1)		Lus10015624 [exp]	2.6	0.8797
AT2G25430			epsin N-terminal homology (ENT...		Lus10001502 [exp]	2.8	0.9172
AT2G04620			Cation efflux family protein (...		Lus10004102 [exp]	3.2	0.8752
AT1G15130			Endosomal targeting BRO1-like ...		Lus10035265 [exp]	3.9	0.9045
AT2G45010			PLAC8 family protein (.1.2)		Lus10038926 [exp]	4.9	0.8852
AT2G26920			Ubiquitin-associated/translati...		Lus10036096 [exp]	6.3	0.8960
AT3G07270			GTP cyclohydrolase I (.1.2)		Lus10003152 [exp]	7.7	0.8693
AT1G61690			phosphoinositide binding (.1)		Lus10018391 [exp]	10.6	0.8667

Compare expression of checked genes

Lus10021073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.