Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62930 272 / 1e-85 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 272 / 1e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 269 / 1e-84 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 264 / 2e-82 RPF2 rna processing factor 2 (.1) AT1G12775 259 / 3e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 258 / 3e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63150 255 / 3e-79 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63070 253 / 7e-79 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G62910 254 / 2e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12700 253 / 1e-77 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003433 [exp] 445 / 3e-153 AT1G12700 396 / 2e-129 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10008593 [exp] 444 / 8e-153 AT1G12700 400 / 7e-131 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10022861 [exp] 436 / 1e-149 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014244 [exp] 425 / 2e-145 AT1G12700 397 / 7e-130 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014245 [exp] 418 / 2e-142 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014247 [exp] 416 / 4e-142 AT1G62930 340 / 3e-109 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014242 [exp] 399 / 2e-137 AT1G62930 256 / 5e-78 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003429 [exp] 388 / 2e-135 AT1G62930 173 / 1e-49 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029737 [exp] 364 / 4e-120 AT1G63130 424 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G117600 [exp] 321 / 2e-106 AT1G12700 330 / 1e-105 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 324 / 6e-106 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G257300 [exp] 320 / 5e-104 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050180 [exp] 319 / 6e-104 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G074500 [exp] 317 / 2e-103 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271400 [exp] 314 / 4e-102 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.019G021200 [exp] 313 / 6e-102 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G149800 [exp] 314 / 1e-101 AT1G12700 482 / 6e-162 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034200 [exp] 313 / 1e-101 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 313 / 1e-101 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10021074 pacid=23182309 polypeptide=Lus10021074 locus=Lus10021074.g ID=Lus10021074.BGIv1.0 annot-version=v1.0 ATGGATGGATTGTGCAAAGATGGAAAAGTTGTTGATGCTGCAAAGTTGATGGATAAGATTGTTTCTTTAGGAATTGAACCAAATGTTGTCACTTATAATT CTATCATGAATGGCCTATGTAAGATGGGTGAAACCAGTGCCGCTCATAGATTGCTAGAGAAGATGGAAGACAGAGGTTATCAACCTAGTGTGGTTACTTA CAATATTATAATGGATAGCTTTTGTAAGGGTGGGTTGGTATCTAAAGCATTAGATGAGTTTACCAAGATGAAGGATAGAAACTGTTCACCAGATGTTTTT AGTTACAGTAATTTGATTCATGGTTTATGTGTTTCAAGTCGAAGGAATGAAGCTATATTGTTGTTCGATGAAATGTTAGAAAGGAATGTCATTCCTCATG TAATCACCTATAACATTCTGATTGATTCTTTTTGCAAAGATGGAATGGTCCGTGAGGCTACAGCTATTGTCAAAGCGATGATGCAAAAAGGACAGCATCC GGATATCTTCACTTACAATTCATTGCTAGATGGGTTTTGCCGAGCAGGGAGAATGGAAGATGCAGAAACACTTCTCAAGGAAATGTGCAACCATGGACAG TTTCCTGATATGGTGACATGGGGAACTTTGCTAAGTGGCTGGTGCAGAAATGGTAATATTGATAAGGCATTAGCTCTATTTCAACAAATGGAGAGCAGTA GGTTGAAGCCAAGAATTTCCGACTATAATATTCTTATTGGTAGCTTGTGGAAAGCAAGGAGGGTTAATGAGGCAAGGGATATGTTTGCGAGGCTTTCTAA AGATGAGAGGTTACAGCCTGATGTCCATACATATACTGTAGTAATGGATGGACTTTGTAAACAAGGTCTAGTAGATGAAGCATATGATTTATTTAGAGCT ATAGAGAAGAATAGTTGTGTACAGAATAAAGGCTCTTATAATGTAATCATCCATGGATTTCTTCGGCATAAAGATCCACTTGAAGCAGTAGAGCTGATTC AAGAGATGGTGAATAAGGGTTTCTCAGCTGATGCAACCACATTGGCCTTGCTGGTAGAATTGCTGCCTAAAAACCAGCCAGACCATCCACTTTTGAGAAA GCTCCTAGGTGATTCTTATGTGGATAGAGGAAAGGTCGAGCCTCAGGGTTTATCAGCAGAAGATTAG
AA sequence Show only first row Show all	>Lus10021074 pacid=23182309 polypeptide=Lus10021074 locus=Lus10021074.g ID=Lus10021074.BGIv1.0 annot-version=v1.0 MDGLCKDGKVVDAAKLMDKIVSLGIEPNVVTYNSIMNGLCKMGETSAAHRLLEKMEDRGYQPSVVTYNIIMDSFCKGGLVSKALDEFTKMKDRNCSPDVF SYSNLIHGLCVSSRRNEAILLFDEMLERNVIPHVITYNILIDSFCKDGMVREATAIVKAMMQKGQHPDIFTYNSLLDGFCRAGRMEDAETLLKEMCNHGQ FPDMVTWGTLLSGWCRNGNIDKALALFQQMESSRLKPRISDYNILIGSLWKARRVNEARDMFARLSKDERLQPDVHTYTVVMDGLCKQGLVDEAYDLFRA IEKNSCVQNKGSYNVIIHGFLRHKDPLEAVELIQEMVNKGFSADATTLALLVELLPKNQPDHPLLRKLLGDSYVDRGKVEPQGLSAED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Lus10021074 [exp]	0	1
AT4G29660		EMB2752	embryo defective 2752 (.1)		Lus10032908 [exp]	1.0	0.6956
AT2G22870		EMB2001	embryo defective 2001, P-loop ...		Lus10011703 [exp]	6.5	0.6943
AT5G09225			unknown protein		Lus10033507 [exp]	8.5	0.6599
AT3G52040			unknown protein		Lus10005332 [exp]	9.0	0.6923
AT1G19240			unknown protein		Lus10034891 [exp]	28.3	0.6620
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10005043 [exp]	38.1	0.6472
AT1G76065			LYR family of Fe/S cluster bio...		Lus10005622 [exp]	38.6	0.6319
AT3G52050			5'-3' exonuclease family prote...		Lus10035938 [exp]	42.1	0.6574
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10017298 [exp]	45.9	0.5841
AT1G02160			Cox19 family protein (CHCH mot...		Lus10032273 [exp]	50.1	0.6435

Compare expression of checked genes

Lus10021074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.