Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17570 437 / 2e-155 TatD related DNase (.1) AT3G03500 359 / 2e-125 TatD related DNase (.1) AT3G52390 59 / 1e-09 TatD related DNase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017234 [exp] 531 / 0 AT5G17570 397 / 7e-140 TatD related DNase (.1) Lus10013590 [exp] 77 / 1e-15 AT3G52390 524 / 0.0 TatD related DNase (.1.2) Lus10021262 [exp] 76 / 2e-15 AT3G52390 521 / 0.0 TatD related DNase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G073800 [exp] 466 / 7e-167 AT5G17570 456 / 5e-163 TatD related DNase (.1) Potri.016G068400 [exp] 57 / 5e-09 AT3G52390 566 / 0.0 TatD related DNase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [flax] [poplar] Amidohydrolase PF01026 [flax] [poplar] TatD_DNase TatD related DNase
Representative CDS sequence Show only first row Show all	>Lus10021077 pacid=23182348 polypeptide=Lus10021077 locus=Lus10021077.g ID=Lus10021077.BGIv1.0 annot-version=v1.0 ATGGCGAAGACCATCAAACTATTTGATGCGCACTGCCACCTCCAAGATCCCAGAGTCCTTAACAAAGCTCCCCAACTCATAGCTGCTGCACTGGACACTG GTGTTGCCCGCTTCGCAGTGAATGGAGTTTCCGAGAAAGATTGGAGCTTGGTTAAAGATATGGGGGAGCAGTACCCTTCTGTTGTCCCTTGCTTTGGTCT CCATCCTTGGTTTATTAGGGAGAGAACTCCTAATTGGTTCGATACATTGCAAGAGTTTCTTGAAGCCACTCCCACTGCTGCAGTTGGAGAGATTGGTTTA GACAAAGGTTCACATGGGAAGACAATTGATTTCGCTGATCAGGTTGAAGTATTCAAGAAACAACTTCAACTTGCCAAGGAACTGAACAAACCAGCATCAG TTCATTGTGTTCGTGCTTTTGGTGATCTTCTTGAGATAATGAAAAGCACGGGGCCTTTTCCTGCCGGTGTCATCCTTCATTCTTACTTGGGTTCGGCCGA GATGGTTCCAGAATTTGCGAAGCTTGGTGCTTACTTCTCATTTTCTGGTTTCCTCATGTCCATGAAAATACAAAAGTCAAAGAAGATGCTGGCAGCGGTG CCGTCTGACAGAATATTGTTGGAAACAGATGCACCAGATGCAACGCCATCTTTAAATGTGGACACTCTGTATTTGGTTGATAGTAATGATTCCAGATCCG AAGCAACTCATGCCCGTGAACAAAATTCTTCAACCTCCAGTGAGAATTCACAAGCTTCAAAAGATGCATCAAGCCCCCCAAAGGAAACACTTAACCATCC TGCTAACATTCATCACGTACTCGATCACGTTTCGTATTTGTTAGAATTGAGTAAAGAAGAAGTTGCCGAAGGAAGTTACAGAAATGCAGTACGCTTGTTC ACATTTGAAGGCTCGAAGTTGCAGTTAGAATAA
AA sequence Show only first row Show all	>Lus10021077 pacid=23182348 polypeptide=Lus10021077 locus=Lus10021077.g ID=Lus10021077.BGIv1.0 annot-version=v1.0 MAKTIKLFDAHCHLQDPRVLNKAPQLIAAALDTGVARFAVNGVSEKDWSLVKDMGEQYPSVVPCFGLHPWFIRERTPNWFDTLQEFLEATPTAAVGEIGL DKGSHGKTIDFADQVEVFKKQLQLAKELNKPASVHCVRAFGDLLEIMKSTGPFPAGVILHSYLGSAEMVPEFAKLGAYFSFSGFLMSMKIQKSKKMLAAV PSDRILLETDAPDATPSLNVDTLYLVDSNDSRSEATHAREQNSSTSSENSQASKDASSPPKETLNHPANIHHVLDHVSYLLELSKEEVAEGSYRNAVRLF TFEGSKLQLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17570			TatD related DNase (.1)		Lus10021077 [exp]	0	1
AT4G13270			Late embryogenesis abundant (L...		Lus10043216 [exp]	10.5	0.7919
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10011870 [exp]	19.1	0.8076
AT1G31910			GHMP kinase family protein (.1...		Lus10010422 [exp]	34.3	0.7490
AT2G30990			Protein of unknown function (D...		Lus10033602 [exp]	34.7	0.7734
AT5G22950		VPS24.1	SNF7 family protein (.1)		Lus10021423 [exp]	37.1	0.7738
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10038903 [exp]	45.2	0.7771
AT2G15760			Protein of unknown function (D...		Lus10027912 [exp]	53.6	0.7560
AT5G20910		AIP2	ABI3-interacting protein 2, RI...		Lus10017865 [exp]	54.6	0.7575
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10026751 [exp]	64.8	0.7551
AT5G37720		DIP2, ALY4	interacting with DNA-binding d...		Lus10010982 [exp]	71.6	0.7430

Compare expression of checked genes

Lus10021077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.