Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09690 280 / 4e-98 Translation protein SH3-like family protein (.1) AT1G09590 280 / 4e-98 Translation protein SH3-like family protein (.1) AT1G57860 275 / 4e-96 Translation protein SH3-like family protein (.1) AT1G57660 275 / 4e-96 Translation protein SH3-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017232 [exp] 318 / 3e-113 AT1G09590 292 / 6e-103 Translation protein SH3-like family protein (.1) Lus10016241 [exp] 303 / 3e-107 AT1G09590 295 / 4e-104 Translation protein SH3-like family protein (.1) Lus10030882 [exp] 300 / 4e-106 AT1G09690 296 / 2e-104 Translation protein SH3-like family protein (.1) Lus10029302 [exp] 300 / 4e-106 AT1G09690 294 / 1e-103 Translation protein SH3-like family protein (.1) Lus10030607 [exp] 298 / 2e-105 AT1G09590 295 / 4e-104 Translation protein SH3-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G195400 [exp] 289 / 1e-101 AT1G57860 305 / 5e-108 Translation protein SH3-like family protein (.1) Potri.016G061100 [exp] 287 / 7e-101 AT1G57860 305 / 7e-108 Translation protein SH3-like family protein (.1) Potri.003G159500 [exp] 284 / 9e-100 AT1G09690 305 / 4e-108 Translation protein SH3-like family protein (.1) Potri.001G071100 [exp] 282 / 5e-99 AT1G09690 307 / 7e-109 Translation protein SH3-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0107 [flax] [poplar] KOW PF01157 [flax] [poplar] Ribosomal_L21e Ribosomal protein L21e
Representative CDS sequence Show only first row Show all	>Lus10021079 pacid=23182377 polypeptide=Lus10021079 locus=Lus10021079.g ID=Lus10021079.BGIv1.0 annot-version=v1.0 ATGCCGGCGGGTCACGGTCTTCGTTCTCGAACTCGAGATCTGTTCCAGAGAGGCTTCAGGAAGCGGGGTTACATTCCTTTGACGACTTACCTCCGTTCAT ACAAGGTCGGAGACTACGTCGACGTCAAGGTCAATGGCGCCATTCACAAAGGTATGCCGCACAAGTTCTACCATGGACGCACCGGCCGCGTCTGGAACGT CACCAAGCGCGCCATTGGCGTCGAGATGAACAAGCAGGTAAGGGGCAAGATCCTGAGGAAAAGGATCCACGTTAGGATTGAGCACGTCATCCCATCAAGG TGCACAGAGGAATTCCGTCTCAGGAAGAAGAAGAACGACGAACTGAAGGCAGCAGCAAAGGCGAAAGGTGAGAAGATCAGCACCAAGAGACAGCCTCAAG GCCCTAAACCCGGTTTCATGGTGGGGGGTGCAACTCTTGAAACTGTTACACCTATTCCGTACGACGTCACCAACGATCTCAAGGGTGGATATTAG
AA sequence Show only first row Show all	>Lus10021079 pacid=23182377 polypeptide=Lus10021079 locus=Lus10021079.g ID=Lus10021079.BGIv1.0 annot-version=v1.0 MPAGHGLRSRTRDLFQRGFRKRGYIPLTTYLRSYKVGDYVDVKVNGAIHKGMPHKFYHGRTGRVWNVTKRAIGVEMNKQVRGKILRKRIHVRIEHVIPSR CTEEFRLRKKKNDELKAAAKAKGEKISTKRQPQGPKPGFMVGGATLETVTPIPYDVTNDLKGGY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09590			Translation protein SH3-like f...		Lus10021079 [exp]	0	1
AT2G21580			Ribosomal protein S25 family p...		Lus10034277 [exp]	1.7	0.8827
AT4G15000			Ribosomal L27e protein family ...		Lus10039017 [exp]	2.0	0.9076
AT1G14620		XTR2, EXGT-A2, ...	decoy (.1.2)		Lus10012875 [exp]	2.2	0.8787
AT1G30880			unknown protein		Lus10001224 [exp]	2.4	0.8695
AT2G03530		ATUPS2, UPS2	ARABIDOPSIS THALIANA UREIDE PE...		Lus10036911 [exp]	2.8	0.9016
AT1G73940			unknown protein		Lus10017355 [exp]	2.8	0.8605
AT1G03360		ATRRP4	ribosomal RNA processing 4 (.1...		Lus10008171 [exp]	4.0	0.8535
AT4G15000			Ribosomal L27e protein family ...		Lus10027314 [exp]	4.9	0.8807
AT5G04800			Ribosomal S17 family protein (...		Lus10021307 [exp]	5.5	0.8597
AT3G13882			Ribosomal protein L34 (.1.2)		Lus10037626 [exp]	6.7	0.8549

Compare expression of checked genes

Lus10021079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.