Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41945 222 / 1e-72 unknown protein AT5G18250 76 / 2e-16 unknown protein AT3G04040 76 / 2e-16 unknown protein AT1G55210 49 / 1e-06 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) AT5G49040 48 / 3e-06 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G13660 46 / 3e-06 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G58170 47 / 5e-06 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G13662 46 / 9e-06 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G49030 47 / 1e-05 OVA2 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) AT3G13650 44 / 4e-05 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017230 [exp] 295 / 1e-99 AT2G41945 215 / 2e-71 unknown protein Lus10029305 [exp] 245 / 2e-81 AT2G41945 202 / 2e-67 unknown protein Lus10016236 [exp] 92 / 5e-20 AT3G12020 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10020259 [exp] 79 / 1e-17 AT5G18250 174 / 3e-57 unknown protein Lus10002635 [exp] 69 / 5e-14 AT3G04040 170 / 3e-55 unknown protein Lus10017231 [exp] 54 / 2e-08 AT1G58170 191 / 2e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10016237 [exp] 46 / 3e-06 AT1G58170 149 / 6e-47 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10042488 [exp] 45 / 2e-05 AT1G58170 202 / 1e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10026176 [exp] 45 / 3e-05 AT1G58170 207 / 1e-68 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G195200 [exp] 236 / 5e-78 AT2G41945 200 / 8e-67 unknown protein Potri.001G023000 [exp] 79 / 6e-18 AT5G18250 144 / 2e-45 unknown protein Potri.016G061000 [exp] 50 / 4e-07 AT1G58170 214 / 2e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060700 [exp] 49 / 8e-07 AT1G65870 186 / 2e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216400 [exp] 48 / 2e-06 AT1G58170 225 / 1e-75 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060900 [exp] 48 / 3e-06 AT1G58170 197 / 1e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216300 [exp] 47 / 4e-06 AT1G55210 221 / 5e-74 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.003G216200 [exp] 47 / 6e-06 AT1G55210 239 / 2e-81 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.006G195300 [exp] 46 / 8e-06 AT5G49040 202 / 2e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G009100 [exp] 46 / 9e-06 AT1G58170 238 / 1e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021080 pacid=23182283 polypeptide=Lus10021080 locus=Lus10021080.g ID=Lus10021080.BGIv1.0 annot-version=v1.0 ATGGCCACCAAAGCCTTCCACGTCACCCCCGTTTTGGGGAGGAACACCCCGTTTTCCGATGTGAGGGAGATGCCGGTGGTCGGAGGGAGCTGGGTTATCA GGTTTGCTAGAGGGATTTCCGGCGCCGCTCACCTAATATCCCCGCTACATCCGCATCGCCAACGTGCAAGGCCTCGTCAACCTTCTCCGACATACCGCCA AAGATCTCCAACACCCGTTAGGCTGCCCAAATCCCGCCACGGCGGCTGGCAACGCTCTGCACGCCGTCTCCATCGTTCCTGCGTCCATGCAACCATCCGC CTCTATAAAATCGCGAGCCCCCCAGAGTTCGTAGTTGCCACTGCAGCCCAACTCGGTTCCTCAGAAGGAGGGGGAGTTGACTTCGTCAGTGGTACAGGCG GGTCACCCCAGTGTGACCCGCCCAACGGCATAGTTTCACAGTGGGAGTTGCGGAGCCTGGACGACTCCGGCAACACCGATCTCAGAGTCTACCTTCACCG CTGTTGTATGCTGGTTCGGTCGAGTACTCCTGAAAGAAGCAAAGCGGGAGCTAAAGAGTGGAAGGAAACTCCGGCGCCGGAGATGGGAACTCGGGAGGTT TACGAAGAGAAGCTACGCAACGGGAATCTGCATCACGATCCCACCATTAACCCTGGCCTCGGATCACCTCGCTGCCCTCGCTGCCTCTCCCTCCTCGACG CCGATCCCGACAAGGCCGAATGGACCATAACTTCTGTTTTGCACGACGCCACCGCCGTGGCTGGGTCTGGCATTGGTGCGATGCTTAGTGCAGTCCATGG TTTCAATACAGGCATCCCGTTCCTTCAAAATCGCCTCAAGGGACCAAAGTGGCTTCCTTTTGTTGTTGGGTTTCCTCCACTGCTAATGTACTCTGGTGCG TGTGCTACTTTTGGAGGCTATGCTCTTCCAAAGTTTACTCAACTTACAGTGACATCCTACTATGCTGCATCAAGTGCCTCACATTACGGGATTTCACTGC TGACTCGAAAAATTGAGGAGGGCCACATTTCAAGAGTTGAGCAAGAAAAGCGTAGATGA
AA sequence Show only first row Show all	>Lus10021080 pacid=23182283 polypeptide=Lus10021080 locus=Lus10021080.g ID=Lus10021080.BGIv1.0 annot-version=v1.0 MATKAFHVTPVLGRNTPFSDVREMPVVGGSWVIRFARGISGAAHLISPLHPHRQRARPRQPSPTYRQRSPTPVRLPKSRHGGWQRSARRLHRSCVHATIR LYKIASPPEFVVATAAQLGSSEGGGVDFVSGTGGSPQCDPPNGIVSQWELRSLDDSGNTDLRVYLHRCCMLVRSSTPERSKAGAKEWKETPAPEMGTREV YEEKLRNGNLHHDPTINPGLGSPRCPRCLSLLDADPDKAEWTITSVLHDATAVAGSGIGAMLSAVHGFNTGIPFLQNRLKGPKWLPFVVGFPPLLMYSGA CATFGGYALPKFTQLTVTSYYAASSASHYGISLLTRKIEEGHISRVEQEKRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41945			unknown protein		Lus10021080 [exp]	0	1
AT5G57370			unknown protein		Lus10001311 [exp]	2.4	0.9316
AT5G39890			Protein of unknown function (D...		Lus10003861 [exp]	8.9	0.9379
AT2G37510			RNA-binding (RRM/RBD/RNP motif...		Lus10003980 [exp]	9.3	0.8977
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10010479 [exp]	9.8	0.9298
AT5G67320		HOS15	high expression of osmotically...		Lus10010384 [exp]	10.4	0.9032
AT1G03910			unknown protein		Lus10035558 [exp]	11.2	0.9201
AT3G63510			FMN-linked oxidoreductases sup...		Lus10016407 [exp]	11.2	0.9050
AT5G59380		MBD6, ATMBD6	methyl-CPG-binding domain 6 (....		Lus10005460 [exp]	12.6	0.9241
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10008727 [exp]	12.9	0.8812
AT2G03190		ASK16	SKP1-like 16 (.1)		Lus10031747 [exp]	13.4	0.9110

Compare expression of checked genes

Lus10021080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.