Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41940 119 / 2e-32 C2H2ZnF ZFP8 zinc finger protein 8 (.1) AT3G58070 110 / 4e-29 C2H2ZnF GIS GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G06650 83 / 2e-19 C2H2ZnF GIS2 GLABROUS INFLORESCENCE STEMS 2, C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G68360 64 / 7e-12 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G67030 62 / 1e-11 C2H2ZnF ZFP6 zinc finger protein 6 (.1) AT1G24625 60 / 8e-11 C2H2ZnF ZFP7 zinc finger protein 7 (.1) AT1G66140 59 / 5e-10 C2H2ZnF ZFP4 zinc finger protein 4 (.1) AT1G80730 57 / 1e-09 C2H2ZnF ATZFP1, ZFP1 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) AT5G10970 57 / 2e-09 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G14010 55 / 4e-09 C2H2ZnF KNUCKLES, KNU KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017229 [exp] 177 / 3e-56 AT3G58070 120 / 5e-34 GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10016238 [exp] 116 / 1e-31 AT3G58070 118 / 1e-32 GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10033567 [exp] 64 / 3e-12 AT1G67030 113 / 2e-31 zinc finger protein 6 (.1) Lus10017609 [exp] 64 / 6e-12 AT1G67030 113 / 2e-31 zinc finger protein 6 (.1) Lus10003681 [exp] 57 / 2e-09 AT1G24625 112 / 9e-31 zinc finger protein 7 (.1) Lus10013243 [exp] 57 / 3e-09 AT1G66140 125 / 3e-34 zinc finger protein 4 (.1) Lus10014350 [exp] 56 / 3e-09 AT1G80730 110 / 1e-29 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) Lus10030764 [exp] 57 / 4e-09 AT1G66140 124 / 1e-33 zinc finger protein 4 (.1) Lus10028997 [exp] 54 / 9e-09 AT1G24625 103 / 1e-27 zinc finger protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G195100 [exp] 160 / 2e-48 AT3G58070 156 / 4e-47 GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.016G060600 [exp] 150 / 6e-45 AT2G41940 155 / 1e-46 zinc finger protein 8 (.1) Potri.010G122400 [exp] 65 / 3e-12 AT1G68360 149 / 2e-44 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G140700 [exp] 61 / 2e-11 AT5G14010 66 / 9e-14 KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.004G097900 [exp] 62 / 3e-11 AT1G67030 100 / 2e-26 zinc finger protein 6 (.1) Potri.002G199200 [exp] 61 / 3e-11 AT1G67030 71 / 2e-15 zinc finger protein 6 (.1) Potri.008G123100 [exp] 62 / 4e-11 AT1G68360 123 / 4e-34 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G102700 [exp] 61 / 9e-11 AT1G66140 157 / 4e-47 zinc finger protein 4 (.1) Potri.008G138000 [exp] 60 / 1e-10 AT1G66140 155 / 2e-46 zinc finger protein 4 (.1) Potri.017G116300 [exp] 60 / 2e-10 AT1G68360 99 / 6e-25 C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021081 pacid=23182430 polypeptide=Lus10021081 locus=Lus10021081.g ID=Lus10021081.BGIv1.0 annot-version=v1.0 ATGGGTGCTGAAAGGGAAACCCACGATTTCCTCAACGTCGAATCTTTCTCCCAGCTCCCTTTTATCCGCCCTTCTCCTCCCCCGATCCGCCTCTTCGGCT CCGAACTCTCCATCAGCACCGCCGCCGCCGCTGCCAAAACCATTGTCGCTAAGGAGTCAAGCCCTCCTGTCGCGGAAAGTTCAACAACCAACAACACCAA CACTATTAGCAACGTAAGTAGTAGTAGTAATAACAACAGGAGGTTCGAGTGTCATTATTGCTGCAGAAACTTCCCCACGTCGCAGGCGCTGGGAGGTCAC CAGAACGCGCACAAGCGGGAGCGGCAGCACGCCAAGAGGGCCCACCACCATGGATACGTAGCCGCTACCGACGCGCCTTTCTACGCTTACAGGACGACGC CGGCTGCTGCTGCTACTCACGCGCCTTTCTACTCGTCCTGGAACGGCGGCGGATCTGTTGCTTCCTCTTCGTCGAGGCTTTACGGCGGCGGCCTAGGGGG GTCGGCTTCTTCGCAGCCTATCACAGGGAGTCCGCTCGGATTGTGGCGGATTCCTCCGTATGGTGGTGGTGGCGGTGGTGCTTCGGGGGTAGGGTTGTAT CGCGACAGGTCGGCGGCGGGAGTGGGGTCCACGCAGGTTTCCTTGCCGTTGTTTGGAGGGGAGGATGTGAGTAAGGGTGGGTCGGATACCGGGTCGAAAG GGCGGTTCGGGTTCGAACCCAAGGTTCAGGATCATAATGTGAGTTTAGATCTTCATCTGTAA
AA sequence Show only first row Show all	>Lus10021081 pacid=23182430 polypeptide=Lus10021081 locus=Lus10021081.g ID=Lus10021081.BGIv1.0 annot-version=v1.0 MGAERETHDFLNVESFSQLPFIRPSPPPIRLFGSELSISTAAAAAKTIVAKESSPPVAESSTTNNTNTISNVSSSSNNNRRFECHYCCRNFPTSQALGGH QNAHKRERQHAKRAHHHGYVAATDAPFYAYRTTPAAAATHAPFYSSWNGGGSVASSSSRLYGGGLGGSASSQPITGSPLGLWRIPPYGGGGGGASGVGLY RDRSAAGVGSTQVSLPLFGGEDVSKGGSDTGSKGRFGFEPKVQDHNVSLDLHL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58070	C2H2ZnF	GIS	GLABROUS INFLORESCENCE STEMS, ...		Lus10021081 [exp]	0	1
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Lus10021303 [exp]	1.0	0.9200
AT5G35400			Pseudouridine synthase family ...		Lus10022949 [exp]	3.7	0.8307
AT1G55370		NDF5	NDH-dependent cyclic electron ...		Lus10020267 [exp]	4.9	0.8681
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10002442 [exp]	5.5	0.8669
AT5G24510			60S acidic ribosomal protein f...		Lus10034864 [exp]	6.0	0.8161
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Lus10032007 [exp]	13.6	0.8657
AT3G15130			Tetratricopeptide repeat (TPR)...		Lus10030124 [exp]	14.3	0.8093
AT3G55140			Pectin lyase-like superfamily ...		Lus10003307 [exp]	15.7	0.8038
AT1G06450			Polynucleotidyl transferase, r...		Lus10008043 [exp]	16.1	0.8514
AT1G62760			Plant invertase/pectin methyle...		Lus10031132 [exp]	18.3	0.8346

Compare expression of checked genes

Lus10021081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.