Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22900 148 / 4e-45 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G65870 147 / 8e-45 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42500 142 / 3e-43 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42510 141 / 1e-42 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G58170 128 / 2e-37 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G55210 124 / 6e-36 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) AT5G49040 123 / 2e-35 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G13650 121 / 1e-34 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT2G21100 120 / 3e-34 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G58090 119 / 5e-33 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021084 [exp] 262 / 8e-90 AT5G42500 164 / 2e-51 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10029306 [exp] 169 / 4e-53 AT1G65870 208 / 5e-69 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10017231 [exp] 154 / 1e-47 AT1G58170 191 / 2e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10026176 [exp] 145 / 3e-44 AT1G58170 207 / 1e-68 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10042488 [exp] 145 / 8e-44 AT1G58170 202 / 1e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10030483 [exp] 132 / 9e-39 AT1G65870 164 / 1e-51 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10039561 [exp] 129 / 2e-37 AT3G13650 157 / 5e-49 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034476 [exp] 128 / 3e-37 AT2G21100 220 / 1e-73 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10032939 [exp] 127 / 7e-37 AT5G42500 139 / 1e-41 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G195300 [exp] 176 / 4e-56 AT5G49040 202 / 2e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060700 [exp] 167 / 7e-53 AT1G65870 186 / 2e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060900 [exp] 166 / 3e-52 AT1G58170 197 / 1e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G061000 [exp] 166 / 4e-52 AT1G58170 214 / 2e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216300 [exp] 158 / 5e-49 AT1G55210 221 / 5e-74 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.003G216400 [exp] 158 / 7e-49 AT1G58170 225 / 1e-75 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.009G131000 [exp] 144 / 7e-44 AT2G21100 236 / 4e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216200 [exp] 140 / 5e-42 AT1G55210 239 / 2e-81 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.001G009100 [exp] 139 / 2e-41 AT1G58170 238 / 1e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060801 [exp] 137 / 3e-41 AT1G58170 164 / 5e-52 Disease resistance-responsive (dirigent-like protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF03018 [flax] [poplar] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Lus10021083 pacid=23182296 polypeptide=Lus10021083 locus=Lus10021083.g ID=Lus10021083.BGIv1.0 annot-version=v1.0 ATGGCCAAGCTGATCATGATCACCAACGTTCTTCTCATCCTCCTCCTCTCCATCCCTACAATTACCACAAGCTCCACCACCCATACCTTCTCCAGAAAAG CATCCAAGGAAACCCTAGGGCTAGCCAGAGAAACGCAAACCCACCTCCATTTCTACGTCCACGACATCGTCACCGGCCCGGAACCAACCCCGACAGCTTA CCCGCTCAACCTGAACACCCTCCCCAGCATCGTCAACTCCTCGACCCTCTTCGGGGTGATGGCCATGGTCGACGATCCTCTGACTGTGGGGCCCGAGTTC GACTCCAAGCTGGTCGGCAGAGCTCAGGGGATGTACGGAAGCGCTTCCTTGACCGGAGAGACGACGCTCTTCCTCGTGTCCAACTTCGTGTTCACTGAGG GGGAGTACAAAGGGAGCACGCTCAGCTTTAACGGACGTAACCCCATCTTAGCTGACGTTAGGGAGTGGCCGATCGTCGGCGGGACTGGGGTTTTCCGGTT CGCCAGAGGGTATGCCGTGGTGAAGCCGTATTCGGTTGATACGGTGAAGCTTAATGCTGTTCTGGAGCTTGATGTCTATGTTACTCATTATTATTAA
AA sequence Show only first row Show all	>Lus10021083 pacid=23182296 polypeptide=Lus10021083 locus=Lus10021083.g ID=Lus10021083.BGIv1.0 annot-version=v1.0 MAKLIMITNVLLILLLSIPTITTSSTTHTFSRKASKETLGLARETQTHLHFYVHDIVTGPEPTPTAYPLNLNTLPSIVNSSTLFGVMAMVDDPLTVGPEF DSKLVGRAQGMYGSASLTGETTLFLVSNFVFTEGEYKGSTLSFNGRNPILADVREWPIVGGTGVFRFARGYAVVKPYSVDTVKLNAVLELDVYVTHYY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22900			Disease resistance-responsive ...		Lus10021083 [exp]	0	1
AT5G05340			Peroxidase superfamily protein...		Lus10009936 [exp]	2.8	0.7601
					Lus10007605 [exp]	3.0	0.7123
AT1G24540		CYP86C1	"cytochrome P450, family 86, s...		Lus10036880 [exp]	10.5	0.6893
AT5G51490			Plant invertase/pectin methyle...		Lus10027203 [exp]	11.8	0.7065
AT3G01190			Peroxidase superfamily protein...		Lus10007638 [exp]	16.2	0.7592
					Lus10039943 [exp]	16.7	0.6818
AT1G50560		CYP705A25	"cytochrome P450, family 705, ...		Lus10015706 [exp]	17.3	0.6497
AT1G32910			HXXXD-type acyl-transferase fa...		Lus10006333 [exp]	33.4	0.6035
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10007603 [exp]	33.7	0.5884
AT1G68630			PLAC8 family protein (.1)		Lus10008890 [exp]	39.7	0.6629

Compare expression of checked genes

Lus10021083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.