Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42500 154 / 9e-48 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42510 151 / 1e-46 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G22900 150 / 6e-46 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G65870 148 / 3e-45 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G55210 143 / 2e-43 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) AT3G13650 139 / 1e-41 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G49040 138 / 2e-41 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G58170 136 / 2e-40 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G13662 134 / 7e-40 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G58090 134 / 6e-39 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021083 [exp] 241 / 1e-81 AT1G22900 150 / 5e-46 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10029306 [exp] 169 / 3e-53 AT1G65870 208 / 5e-69 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10017231 [exp] 156 / 1e-48 AT1G58170 191 / 2e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10026176 [exp] 147 / 8e-45 AT1G58170 207 / 1e-68 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10042488 [exp] 145 / 4e-44 AT1G58170 202 / 1e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10016237 [exp] 133 / 4e-40 AT1G58170 149 / 6e-47 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10039561 [exp] 134 / 1e-39 AT3G13650 157 / 5e-49 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10030483 [exp] 132 / 1e-38 AT1G65870 164 / 1e-51 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10016231 [exp] 130 / 3e-38 AT1G65870 149 / 8e-46 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G195300 [exp] 179 / 3e-57 AT5G49040 202 / 2e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060700 [exp] 175 / 1e-55 AT1G65870 186 / 2e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060900 [exp] 173 / 7e-55 AT1G58170 197 / 1e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216300 [exp] 165 / 7e-52 AT1G55210 221 / 5e-74 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.003G216400 [exp] 164 / 3e-51 AT1G58170 225 / 1e-75 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G061000 [exp] 161 / 2e-50 AT1G58170 214 / 2e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.009G131000 [exp] 158 / 3e-49 AT2G21100 236 / 4e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060801 [exp] 155 / 4e-48 AT1G58170 164 / 5e-52 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G009100 [exp] 150 / 4e-46 AT1G58170 238 / 1e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216200 [exp] 146 / 2e-44 AT1G55210 239 / 2e-81 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF03018 [flax] [poplar] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Lus10021084 pacid=23182439 polypeptide=Lus10021084 locus=Lus10021084.g ID=Lus10021084.BGIv1.0 annot-version=v1.0 ATGGCCAAACTCACCAACCTTGTTCTTCTTACACCTCTAATCCTTCTCCTCCTCGCCACCATTTCCACAAGCTCCACTCACACCCACACCTTCTCCAGAA AGTTAGCATCCAGGAAAGCCCTAAGTCTGACGAGGGAGACGCAAACCCACCTCCATTTCTACTTCCACGACATCATAACGGCCCCGCCGACCCCAACAGC TTACCCGCTCAACATAAACGCCCTCCCGAGCATCGTCAACTCGTCGACCCTCTTCGGGGTGATGGTCATGGCCGACGATCCCCTGACTGCGGGGCCCGAA TTCAACTCCACGCTGGTGGGGAGAGCTCAGGGGATGTACGGAAGCGCTTCCTTCGGAGAGACGGCGTTCTTCATGGTGTTCAACTTCGTGTTCACCGCGG GAGAGTACAAAGGGAGCACGCTCAGCTTGTACGGACGCAACGCCATCTTAGCCGACGTCAGGGAGATGCCCATCGTCGGAGGGACTGGGGTTTTCCGGTT TGCTAGAGGGTATGCCGAGGCCAGGACGTACTCGGTTGATACGGCGACGTTTAATGCGGTTGTGGAGTTCGATGTATATGTTACTCATTATTCTTAG
AA sequence Show only first row Show all	>Lus10021084 pacid=23182439 polypeptide=Lus10021084 locus=Lus10021084.g ID=Lus10021084.BGIv1.0 annot-version=v1.0 MAKLTNLVLLTPLILLLLATISTSSTHTHTFSRKLASRKALSLTRETQTHLHFYFHDIITAPPTPTAYPLNINALPSIVNSSTLFGVMVMADDPLTAGPE FNSTLVGRAQGMYGSASFGETAFFMVFNFVFTAGEYKGSTLSLYGRNAILADVREMPIVGGTGVFRFARGYAEARTYSVDTATFNAVVEFDVYVTHYS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42500			Disease resistance-responsive ...		Lus10021084 [exp]	0	1
AT4G12470		AZI1	azelaic acid induced 1 (.1)		Lus10032261 [exp]	3.3	0.9350
AT2G02310		ATPP2-B6	phloem protein 2-B6 (.1)		Lus10003445 [exp]	3.9	0.8993
AT1G75717			unknown protein		Lus10033147 [exp]	14.9	0.8670
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10012817 [exp]	15.0	0.8864
					Lus10014263 [exp]	17.9	0.8697
AT1G53130		GRI	GRIM REAPER, Stigma-specific S...		Lus10005544 [exp]	19.6	0.9051
AT2G02061			Nucleotide-diphospho-sugar tra...		Lus10031903 [exp]	21.2	0.8928
AT5G51480		SKS2	SKU5 similar 2 (.1)		Lus10038920 [exp]	24.7	0.8989
AT5G51310			2-oxoglutarate (2OG) and Fe(II...		Lus10009025 [exp]	28.9	0.8587
AT2G23630		SKS16	SKU5 similar 16 (.1)		Lus10000837 [exp]	31.1	0.8793

Compare expression of checked genes

Lus10021084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.