Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12010 688 / 0 unknown protein AT3G12012 82 / 4e-19 CPuORF20 conserved peptide upstream open reading frame 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017227 [exp] 1309 / 0 AT3G12010 812 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G060500 [exp] 833 / 0 AT3G12010 806 / 0.0 unknown protein Potri.006G195000 [exp] 815 / 0 AT3G12010 811 / 0.0 unknown protein Potri.016G060550 [exp] 107 / 4e-28 AT3G12012 92 / 5e-27 conserved peptide upstream open reading frame 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07035 [flax] [poplar] Mic1 Colon cancer-associated protein Mic1-like CL0280 [flax] [poplar] PIN PF01936 [flax] [poplar] NYN NYN domain
Representative CDS sequence Show only first row Show all	>Lus10021085 pacid=23182336 polypeptide=Lus10021085 locus=Lus10021085.g ID=Lus10021085.BGIv1.0 annot-version=v1.0 ATGAAAGAAAGGAACACTACTTCCACGCTCAAAAACATATTGGTCAAGTGTGCTGCTCAGGCAAAAGATTATGGAGGTTGTGTTGCGAAAAAGGTTCCTG AAGTTGAGCGTGATATGTGTCTCAAAGAATTTCTGGCCTTGAAGAATTGCATGCAGAACACGCTTAATGTTGGGTTAAGTGGCTCTGGTGGATTGTCCCA TGTGTACTCTCAGTATCCACCCTTACGATGTAGTGTGCCTGGGTCAAGGGGTTTATATTATGACGATGCAAATAAACTGCTACTCTCTCCAACATCTGAC CAGGTCTTCTCATGGAAAACTGTTCCCTTTTCTCCCGATGCTACTGCTACTGCTGACTCCATAAGTGAAGGGCCCATCTTATCTATTCGATATTCGTTGG ATGCGAAATCCATAGCAGTCCAGCGTTCTAATGAAGAAATACATTTCATTCACCGAGAAACAAGAGAAACATTTACTCACACATGCAAACCAGACTCTGA GAGCATACTTGGACTTTTTTGGACAGATTGCCCACTTTGTGATTTGGTGCTTGTGAAGACTAGTGGACTGGATTTGTTTACGATCAACTTTACTTCAAAA TCACTTACCTTGGTAGAAACAAAGAAGTTGAATGTGAGCTGGTTTGTTTATACACATGAGAGTCGCTTGGTTCTTCTTGCTTCAGGAATGCAATGCAAGT CACTTACTGGGTTCCAGGTAGATATGAAATGCCGACAGTTATTATTGTCTTATGCTGTTGACTCTGAAACTTTGGCCAATGTATCTGTACGGTCAATTCT GACTTTGGCTGGACTTTCATCAGTTGGAATTGTACGTTTGCCAAGGTTTGAGATGGTAATGGCCAAATCTGACGCCAACAGTAAGCCTATCCTTGCTGCT GAAGATGTTTTTATTGTCACTGTCTACGGAAGGATATATTGCTTGCAAATTGATAGAGTTGCAATGCAGCTCCAATTATATAGGTTTTATCGCGATGCTG TTGTACAACAGGGCTCACTGCCAATGTTTTCTAGCAAAATTTCTGTTAGCGTGGTTGACAATGTTCTACTTGTTCATCAAGTAGATGCTAGAGTTACTAT ACTCTATGATATATTTGCAGATTCACAAGCCCCCATAACTGCCCCTCTGCCTCTATTGCTTAGAGGTTTGCCTAGATCCAAATCTAGTCAGTCTATTACT GCGAGTGACAGTTTAGGTCGAAACTCAAGTGATCAGGAATCAATTATTTATGGAGATGACTGGAAATTTCTGGTCCCTGACCAAATATGTGATGTTGCAA GCAAGCTGTTGTGGAAGATCCATCTAGACTTAGTGGTTATCTCTGCGAGTAGCTCCGAGGTTCCATCAATTCTCGAATTCTTGCAAAGAAGGAAGCAGGA AGCAAGTAAGTTGGTTGTTAATCCCNNGTCTTACTCGCACTCATTGAAGACAGGTATTGATCTGAAACCAACAAAACCCGGTGAACCCTCAACTTCTGCC AATAACTCAAGCGGATCAGCCAACAACGCATCAAGGGGCGGAGACAGTGAAAAATCTTCCAATCGTTCAGCTTCAGATCCGGACAATTCTGCATGGAATA GATCTCAAGAAGCAGACTCCAGAGATCTCCAGGAAGTAGAGGAGAACTCAGTAGGTGCTGAAAGCTCCAGGACTGGGCAAAATAATGATCAATTGAATGC TGATAATTCTGAGAGGCAGGATTCCCAACTTACTTCGCCAGCAATCTCGCCTGATGAGATGTATAATTGTGTGTTTGCTCCGGTTGAAGAAGCTATGGAT GGAGATCCTTCATACTTAGTTACAATAATAGTCGAGTTCCTTCGAAGGTATGCTCTTTCAGGCCATCGCATTCCAGCTGGCGTATTCAAACAACTGATGT CGACAAATTTCACAAACTTGGAAAAGATTAAACTTCATCCGAACATCTACGTGCTGACGATACAACTTCTAGCACGCAACGGCCGGTTTGCTGAACTGTC TCAATTTATCATAAACAAGGTTCTTGAACCCTCGAAGGAAGTTGCGTTGCAGCTTTTGGAAACAGGTCGTCAGAATTCACAAATAAAGAAGCTGGCTTTG GACATGCTGCGTCAGCTCTATTCGCATCATGACTACGTTGTGTTACTAGTACGGGATGGGTGTTATCTTGAAGCATTGCGTTATGCAAGGAAGAATCAGG TGACTAGTGTCCCTCCTTCACTCTTTCTCGAAGCGGCATTGGCTAGTAAGGATTCACAACATCTAGCTGCAGTCCTGAGGTTCTTTTCGGACTTCATCCC TGGGTTCCGAAACACTTCAGACCACCAAACCTACTTCTGTATCCTCAACGAGATGAACACAGCTGTAGCTGTTTGA
AA sequence Show only first row Show all	>Lus10021085 pacid=23182336 polypeptide=Lus10021085 locus=Lus10021085.g ID=Lus10021085.BGIv1.0 annot-version=v1.0 MKERNTTSTLKNILVKCAAQAKDYGGCVAKKVPEVERDMCLKEFLALKNCMQNTLNVGLSGSGGLSHVYSQYPPLRCSVPGSRGLYYDDANKLLLSPTSD QVFSWKTVPFSPDATATADSISEGPILSIRYSLDAKSIAVQRSNEEIHFIHRETRETFTHTCKPDSESILGLFWTDCPLCDLVLVKTSGLDLFTINFTSK SLTLVETKKLNVSWFVYTHESRLVLLASGMQCKSLTGFQVDMKCRQLLLSYAVDSETLANVSVRSILTLAGLSSVGIVRLPRFEMVMAKSDANSKPILAA EDVFIVTVYGRIYCLQIDRVAMQLQLYRFYRDAVVQQGSLPMFSSKISVSVVDNVLLVHQVDARVTILYDIFADSQAPITAPLPLLLRGLPRSKSSQSIT ASDSLGRNSSDQESIIYGDDWKFLVPDQICDVASKLLWKIHLDLVVISASSSEVPSILEFLQRRKQEASKLVVNPXSYSHSLKTGIDLKPTKPGEPSTSA NNSSGSANNASRGGDSEKSSNRSASDPDNSAWNRSQEADSRDLQEVEENSVGAESSRTGQNNDQLNADNSERQDSQLTSPAISPDEMYNCVFAPVEEAMD GDPSYLVTIIVEFLRRYALSGHRIPAGVFKQLMSTNFTNLEKIKLHPNIYVLTIQLLARNGRFAELSQFIINKVLEPSKEVALQLLETGRQNSQIKKLAL DMLRQLYSHHDYVVLLVRDGCYLEALRYARKNQVTSVPPSLFLEAALASKDSQHLAAVLRFFSDFIPGFRNTSDHQTYFCILNEMNTAVAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12010			unknown protein		Lus10021085 [exp]	0	1
					Lus10030178 [exp]	5.5	0.7855
					Lus10034709 [exp]	6.6	0.8167
AT1G11390			Protein kinase superfamily pro...		Lus10037869 [exp]	8.5	0.7319
AT5G23490			unknown protein		Lus10004286 [exp]	9.5	0.7725
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Lus10018744 [exp]	14.4	0.7882
AT1G77460			Armadillo/beta-catenin-like re...		Lus10042730 [exp]	19.5	0.7160
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10039246 [exp]	22.4	0.7568
AT3G03305			Calcineurin-like metallo-phosp...		Lus10026788 [exp]	22.7	0.7525
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Lus10016830 [exp]	27.9	0.7569
AT5G27970			ARM repeat superfamily protein...		Lus10000943 [exp]	31.6	0.7843

Compare expression of checked genes

Lus10021085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.