Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11890 100 / 2e-23 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) AT5G23680 51 / 3e-07 Sterile alpha motif (SAM) domain-containing protein (.1) AT3G48800 51 / 4e-07 Sterile alpha motif (SAM) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017225 [exp] 466 / 7e-167 AT3G11890 101 / 9e-24 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Lus10016718 [exp] 52 / 2e-07 AT5G23680 173 / 6e-52 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10036012 [exp] 52 / 3e-07 AT5G23680 171 / 4e-51 Sterile alpha motif (SAM) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G198500 [exp] 162 / 2e-48 AT3G11890 108 / 6e-27 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Potri.015G104000 [exp] 52 / 2e-07 AT3G48800 115 / 5e-30 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.012G104700 [exp] 51 / 3e-07 AT3G48800 166 / 2e-49 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.003G164600 [exp] 51 / 3e-07 AT3G48800 133 / 5e-37 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.001G062800 [exp] 50 / 7e-07 AT3G48800 136 / 8e-38 Sterile alpha motif (SAM) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0003 [flax] [poplar] SAM PF07647 [flax] [poplar] SAM_2 SAM domain (Sterile alpha motif)
Representative CDS sequence Show only first row Show all	>Lus10021086 pacid=23182396 polypeptide=Lus10021086 locus=Lus10021086.g ID=Lus10021086.BGIv1.0 annot-version=v1.0 ATGAAGAAATCCAGGTTGATTGCTTGTATTTCCAAATTAGGTAGTGTCCGGCTGATGGGGAGACCAAGGAAGAATCAGCCACCGGTTCAATCTTCCGGCG ATGGAAGCTTTCTTGATGAATTTGATGGAGGAGAAGGCAGCTGGGTGGTAGTCAAACGGCAGAGAGTCACCATTCTGATCCCTCCACCATCTGAGGATGG GGAAGAAGCTATGCATGCGGAAGCTGTTGACCACGATGGCGACGGAACTCGCGAGGTTGCTGCAGTAGCATTGGCGTCCAGCTCGGATGTTCAAATCGGA AATGGTTCAGTGGATGAGCAAAACAAGGTTGCTGCAGCAGCATTGGGTCCCAGCTCAGATATTGAGATTGATACAAACGAAGCCAATCCGGTTTCTACGA TACAGAGAGAACCGGATTTGGATGTCGCAATCGAGGAGCCGAGTTCTGTTCAAATGGGAGCTCCGAAGACGCTTGCAGCATTGGCTGCTCCCAGCTCAGA TGTTGAGATCGATACGAACAAAGCCGATCCTGTTTCTACGATGCAGAGACAACCGTGCTTGAATGTCGTAACGGAGGAGCCAAATGCAGTTCGGACGGAC CATCCAAGAGCTCATCCGAAACCGCCAGGAGGAGTATCGAATAGATCGAAAATCATCAAGCGGCCGAGAACGCTGCCTGGTTTGCGGAGTCTTTTTGACG GGAAGCTGCTGTTGAATCAGACGCTGAGGGCAACACTGATCGAGAGGAAGTTAAAGAAGGCTGGCGGGATGAGCAACTGGCTGGGATCGATTGGGTTGGG TCAGTTTGAGACGATTTTCAATAGCAGGAGCGTCAGAGAGTATCAGCTGGTGAACCTGACAATGAATAAGCTCAAGGATATGGGGGTCGATGCAGTTGGT CCGCGGAGGAAGTTGATGCATGCTATCGACTGCATTTGCCAACCATACTGCTTCGAATCAAAGTGA
AA sequence Show only first row Show all	>Lus10021086 pacid=23182396 polypeptide=Lus10021086 locus=Lus10021086.g ID=Lus10021086.BGIv1.0 annot-version=v1.0 MKKSRLIACISKLGSVRLMGRPRKNQPPVQSSGDGSFLDEFDGGEGSWVVVKRQRVTILIPPPSEDGEEAMHAEAVDHDGDGTREVAAVALASSSDVQIG NGSVDEQNKVAAAALGPSSDIEIDTNEANPVSTIQREPDLDVAIEEPSSVQMGAPKTLAALAAPSSDVEIDTNKADPVSTMQRQPCLNVVTEEPNAVRTD HPRAHPKPPGGVSNRSKIIKRPRTLPGLRSLFDGKLLLNQTLRATLIERKLKKAGGMSNWLGSIGLGQFETIFNSRSVREYQLVNLTMNKLKDMGVDAVG PRRKLMHAIDCICQPYCFESK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11890			Sterile alpha motif (SAM) doma...		Lus10021086 [exp]	0	1
AT2G27940			RING/U-box superfamily protein...		Lus10016163 [exp]	1.4	0.8749
AT1G27700			Syntaxin/t-SNARE family protei...		Lus10007766 [exp]	4.9	0.8660
AT5G57450		ATXRCC3, XRCC3	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10029944 [exp]	11.8	0.7630
AT2G34140	DOF	AtDof2. 3	Dof-type zinc finger DNA-bindi...		Lus10013905 [exp]	12.1	0.8173
AT1G27700			Syntaxin/t-SNARE family protei...		Lus10018703 [exp]	13.3	0.8172
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10028265 [exp]	14.3	0.8068
AT5G05140			Transcription elongation facto...		Lus10039000 [exp]	14.9	0.8657
					Lus10007301 [exp]	20.1	0.8295
AT5G05140			Transcription elongation facto...		Lus10027295 [exp]	23.4	0.8646
AT2G23420		NAPRT2	nicotinate phosphoribosyltrans...		Lus10009367 [exp]	24.5	0.8312

Compare expression of checked genes

Lus10021086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.