Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03475 599 / 0 LIN2, HEMF1, ATCPO-I LESION INITIATION 2, Coproporphyrinogen III oxidase (.1) AT4G03205 296 / 1e-100 HEMF2 Coproporphyrinogen III oxidase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017221 [exp] 586 / 0 AT1G03475 557 / 0.0 LESION INITIATION 2, Coproporphyrinogen III oxidase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G023900 [exp] 607 / 0 AT1G03475 593 / 0.0 LESION INITIATION 2, Coproporphyrinogen III oxidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01218 [flax] [poplar] Coprogen_oxidas Coproporphyrinogen III oxidase
Representative CDS sequence Show only first row Show all	>Lus10021087 pacid=23182315 polypeptide=Lus10021087 locus=Lus10021087.g ID=Lus10021087.BGIv1.0 annot-version=v1.0 ATGATGGAGACGGAGCGCCCCGACACGTTTCTCCGGGAATCGGAGAGCGGAGAAGTGAGGGGCCGGTTCGAGAAGATGATCAGGGAAGCTCAGGACAGCG TCTGCAAGGCACTCGAAGCTGTTGACGGAGCCGGTAAGTTTAAGGAGGATGTTTGGTCTCGACCTGGAGGCGGTGGAGGCATTAGCAGAGTGTTGCAAGA CGGTGCCGTATTTGAGAAGGCCGGAGTCAATGTCTCCGTCGTCTATGGCGTTATGCCTCCTGAAGCTTATAGAGCTGCTAGGGCTGCTTCTCCTGATCAG AAACCTGGCCCAATCCCATTTTTCGCAGCTGGAATCAGCTCTGTGTTGCATCCCAAGAATCCTTTTGCTCCGACATTGCATTTTAACTACAGATACTTCG AGACTGATGCCCCTAAAGATGCGCCTGGAGCTCCTCGGCAATGGTGGTTTGGAGGTGGGACTGACTTAACTCCAGCTTATATCTTTGACGATGATGTGAA GCACTTTCATTCGATTCAAAAGCAGGCATGTGACAAGTTTGATCCCTCCTTCTATCCGCGGTTCAAAAAATGGTGTGATGATTATTTCTATATCAAGCAC CGAGGTGAGAGGCGAGGGCTTGGGGGTATATTCTTCGATGATCTTAACGATTACGATCAAGAAATGCTTCTTTCGTTCGCAACTGAGTGTGCAAATTCTG TCATACCTGCATATGTTCCAATTGTGGAGAGAAGGAAGGATACTCCATTTACTGACCAGCAACTAGCATGGCAACAGTTGCGTAGAGGCCGCTACGTAGA ATTCAACCTGGTCTACGATAGGGGTACAACGTTCGGACTCAAAACAGGAGGTCGAATAGAGAGTATTCTCGTTTCATTGCCACTCTCTGCCCGGTGGGAG TATGACCATAAACCAGAAGAAGGAAGTGAAGAATGGAACCTGCTGGATGCTTGTATCAACCCTAGAGAATGGGTCTAA
AA sequence Show only first row Show all	>Lus10021087 pacid=23182315 polypeptide=Lus10021087 locus=Lus10021087.g ID=Lus10021087.BGIv1.0 annot-version=v1.0 MMETERPDTFLRESESGEVRGRFEKMIREAQDSVCKALEAVDGAGKFKEDVWSRPGGGGGISRVLQDGAVFEKAGVNVSVVYGVMPPEAYRAARAASPDQ KPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDAPGAPRQWWFGGGTDLTPAYIFDDDVKHFHSIQKQACDKFDPSFYPRFKKWCDDYFYIKH RGERRGLGGIFFDDLNDYDQEMLLSFATECANSVIPAYVPIVERRKDTPFTDQQLAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLSARWE YDHKPEEGSEEWNLLDACINPREWV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03475		LIN2, HEMF1, AT...	LESION INITIATION 2, Coproporp...		Lus10021087 [exp]	0	1
AT1G03475		LIN2, HEMF1, AT...	LESION INITIATION 2, Coproporp...		Lus10017221 [exp]	7.1	0.9128
AT5G39890			Protein of unknown function (D...		Lus10013620 [exp]	11.6	0.8784
AT5G08570			Pyruvate kinase family protein...		Lus10013450 [exp]	13.9	0.8772
AT4G36910		CBSX1, CDCP2, L...	LOSS OF THE TIMING OF ET AND J...		Lus10041576 [exp]	17.9	0.8243
AT3G10040	Trihelix		sequence-specific DNA binding ...		Lus10008643 [exp]	19.4	0.8695
AT4G17260			Lactate/malate dehydrogenase f...		Lus10004350 [exp]	19.6	0.8696
AT5G24650			Mitochondrial import inner mem...		Lus10005289 [exp]	23.7	0.7937
AT5G14060		CARAB-AK-LYS	Aspartate kinase family protei...		Lus10041523 [exp]	25.0	0.8099
AT1G20270			2-oxoglutarate (2OG) and Fe(II...		Lus10017249 [exp]	28.0	0.8416
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10025252 [exp]	28.1	0.8354

Compare expression of checked genes

Lus10021087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.