Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24318 300 / 5e-99 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G46570 281 / 1e-92 Glycosyl hydrolase superfamily protein (.1) AT3G55430 263 / 1e-84 O-Glycosyl hydrolases family 17 protein (.1) AT5G42720 248 / 5e-79 Glycosyl hydrolase family 17 protein (.1) AT2G39640 246 / 5e-77 glycosyl hydrolase family 17 protein (.1) AT2G16230 238 / 3e-74 O-Glycosyl hydrolases family 17 protein (.1) AT4G34480 222 / 5e-68 O-Glycosyl hydrolases family 17 protein (.1) AT1G30080 211 / 7e-65 Glycosyl hydrolase superfamily protein (.1) AT1G32860 211 / 1e-64 Glycosyl hydrolase superfamily protein (.1) AT5G55180 201 / 2e-60 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004962 [exp] 399 / 9e-138 AT5G24318 462 / 8e-161 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040808 [exp] 399 / 1e-136 AT5G24318 484 / 2e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10016539 [exp] 398 / 1e-136 AT5G24318 484 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040294 [exp] 286 / 1e-93 AT3G55430 483 / 2e-169 O-Glycosyl hydrolases family 17 protein (.1) Lus10023245 [exp] 286 / 2e-93 AT5G24318 561 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10005166 [exp] 284 / 1e-91 AT5G24318 385 / 1e-129 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10005459 [exp] 274 / 1e-90 AT5G24318 341 / 3e-115 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10008865 [exp] 270 / 3e-87 AT5G24318 517 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10032038 [exp] 244 / 2e-80 AT5G24318 155 / 4e-45 O-Glycosyl hydrolases family 17 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G240000 [exp] 352 / 2e-118 AT5G24318 508 / 2e-178 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.008G056000 [exp] 311 / 2e-103 AT3G55430 494 / 1e-173 O-Glycosyl hydrolases family 17 protein (.1) Potri.012G017800 [exp] 293 / 6e-96 AT5G24318 583 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.008G055900 [exp] 280 / 4e-91 AT3G55430 494 / 8e-174 O-Glycosyl hydrolases family 17 protein (.1) Potri.015G010100 [exp] 275 / 8e-90 AT5G24318 466 / 1e-163 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.010G203800 [exp] 274 / 2e-88 AT3G55430 354 / 2e-118 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G153800 [exp] 241 / 5e-76 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G182500 [exp] 232 / 9e-73 AT2G16230 504 / 4e-177 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G183800 [exp] 230 / 6e-72 AT2G16230 515 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G261800 [exp] 230 / 1e-71 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10021088 pacid=23182343 polypeptide=Lus10021088 locus=Lus10021088.g ID=Lus10021088.BGIv1.0 annot-version=v1.0 ATGGCGAATATCACCATCCTCCTCCTCCTTCTGCCCTCTCTCTGCCTCATCCCTCAATCCACAGCCGCCGCCGTCGCCGCCGACTCAGTCGGAGTTGTCT ACGCAACCAACGCCGACAACCTCCCACCTCCAGCCAAAGTAGCCTCCTTCCTCAAATCCCACACTATAATCGACAGAATCAAACTCTTCGACTCCAACCC AGACATCCTCCGGGGATTCGCCAACACCGGAATCTCCGTCGCCGTCACAATCCCGAGAGAAGAAGTCCCATCCTTGGCCAATCTCCCCGCCGCCAAATCA TGGGTCGCCAAACACATCTCCCCATTCCACCCGCAAACCAAATTCAATTACATCCTCGTCGGAAACGAGGTCTTCTACTGGAACGAAACTAGAGTAATCA GGAAACTCGTCCCTGCAATGAAGGCCCTAACCAAAGCCCTGAATCTGGCGAATCTCACGCGGATCAAGGTCTCCACTCCTCACGCGCTTCAGTTCATCGA ATCGACCCAGCCCCCCAGCTCGGCCGAGTTCCGGATCTTCGAGGCACCCGTTCTGCGCAAGCTGCTGGAGTTCCACCTCCGTACGAGGACTCCGTTCATG GTGAACCCGTACCCGTTCCTCAAGGTATGGGACGGGTACCCGGATCCGGATTACGCGGTTTTCAGGGGGAACAAAGGGGTGTTGGATAAGGCTACTGGGA AGATGTATACGAATATGCTGGACGAGATGCTGGATGCGGTTCATGTTTCGATGAAGAAGCTGGATAAGAGATTTAAAGATGTGGAGATTGTGATTGGGGA GACGGGTTGGCCGACGGCGGGTGACCCGGAACAGCCGGGTCCGGGGATGGAGAATGCGATGTCGTATAATCGGAACGCGGTGAAGCACATGAGATCGGGG AAAGGGACGCCGTTGATGCCGAATCGGACATTCGAGACTTATATCTTCTCCCTGTTTAACGAGAACCTGAGGATTTACATTTCCGACCAGAGTTTCGGTG TTTTGAAGCCGGATTTCTCCGCCGTGTACGACGCCGGGCTCATCCGTGGCAAGCCGGTGTAA
AA sequence Show only first row Show all	>Lus10021088 pacid=23182343 polypeptide=Lus10021088 locus=Lus10021088.g ID=Lus10021088.BGIv1.0 annot-version=v1.0 MANITILLLLLPSLCLIPQSTAAAVAADSVGVVYATNADNLPPPAKVASFLKSHTIIDRIKLFDSNPDILRGFANTGISVAVTIPREEVPSLANLPAAKS WVAKHISPFHPQTKFNYILVGNEVFYWNETRVIRKLVPAMKALTKALNLANLTRIKVSTPHALQFIESTQPPSSAEFRIFEAPVLRKLLEFHLRTRTPFM VNPYPFLKVWDGYPDPDYAVFRGNKGVLDKATGKMYTNMLDEMLDAVHVSMKKLDKRFKDVEIVIGETGWPTAGDPEQPGPGMENAMSYNRNAVKHMRSG KGTPLMPNRTFETYIFSLFNENLRIYISDQSFGVLKPDFSAVYDAGLIRGKPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10021088 [exp]	0	1
AT1G76680		OPR1, ATOPR1	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10001275 [exp]	1.4	0.9726
					Lus10026740 [exp]	1.7	0.9733
AT2G26230			uricase / urate oxidase / nodu...		Lus10028868 [exp]	1.7	0.9723
					Lus10027915 [exp]	4.9	0.9658
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10021023 [exp]	5.8	0.9589
AT3G14880			unknown protein		Lus10042453 [exp]	8.4	0.9657
AT2G18670			RING/U-box superfamily protein...		Lus10019979 [exp]	8.9	0.9665
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10024246 [exp]	9.3	0.9535
					Lus10018894 [exp]	9.5	0.9659
AT4G38260			Protein of unknown function (D...		Lus10016024 [exp]	10.4	0.9506

Compare expression of checked genes

Lus10021088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.