Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54720 580 / 0 MFO1, HPT, COP2, AMP1 PRIMORDIA TIMING, Multifolia, HAUPTLING, CONSTITUTIVE MORPHOGENESIS 2, ALTERED MERISTEM PROGRAM 1, Peptidase M28 family protein (.1) AT5G19740 462 / 6e-156 Peptidase M28 family protein (.1) AT4G07670 175 / 6e-51 protease-associated (PA) domain-containing protein (.1), protease-associated (PA) domain-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017223 [exp] 937 / 0 AT3G54720 630 / 0.0 PRIMORDIA TIMING, Multifolia, HAUPTLING, CONSTITUTIVE MORPHOGENESIS 2, ALTERED MERISTEM PROGRAM 1, Peptidase M28 family protein (.1) Lus10011133 [exp] 385 / 2e-126 AT5G19740 806 / 0.0 Peptidase M28 family protein (.1) Lus10043036 [exp] 362 / 1e-117 AT5G19740 745 / 0.0 Peptidase M28 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G064300 [exp] 657 / 0 AT3G54720 803 / 0.0 PRIMORDIA TIMING, Multifolia, HAUPTLING, CONSTITUTIVE MORPHOGENESIS 2, ALTERED MERISTEM PROGRAM 1, Peptidase M28 family protein (.1) Potri.006G153300 [exp] 478 / 1e-161 AT5G19740 877 / 0.0 Peptidase M28 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04253 [flax] [poplar] TFR_dimer Transferrin receptor-like dimerisation domain CL0035 [flax] [poplar] Peptidase_MH PF04389 [flax] [poplar] Peptidase_M28 Peptidase family M28
Representative CDS sequence Show only first row Show all	>Lus10021090 pacid=23182325 polypeptide=Lus10021090 locus=Lus10021090.g ID=Lus10021090.BGIv1.0 annot-version=v1.0 ATGCCTCACCACGCCTACTCCCCCTCGCGCGTAGCCGTCGCGGCGCCCACGCATGNNNNNNNNNNNNNAGGAGTGCTGGCGGAGCCCGTGTACGTCAACC ACGGCAGCGAGGAGGACTACCGTGCGCTGTACGCGCTAGGGGTCAGCGTCAAGGAGCGCGTGGTGTTGGTTAGAAAGGGCGGTGGCGGGTTGAGCAGAGG GGCGACGGTTCGGATTGCGGCGAGACAAGGTGCGGCGGCAGCAGTTCTGTTCGGCGGCGCTAGTGGGGTGGAAAGAGGGACCGTAATGAATGGGATGGGG GACCCACTGAGTCCCGGTTGGGCGGCGGTTGAAGGAGGTGAGAGGTTGGAGGAAAAGCAAGTGTCGGGAGAAAAGTTCCCACTGATTCCGTCGATTCCTA TTTCGTCTCAGGCGGCTGACGTCATCTTGGGTTCCCTCGGTGGTCCAGCGGCTCCGACTGAGTGGGGAATCGGCCCCCCTGGTCAGCGCGTCGGTCCTGG TCCAACCTTGGTCAACTTGACTTTTCTGGGAGAGAAGAAGGAGGCAAGAATACAGAACGTGTTTGCAGTGATAAGAGGGTTAGAAGAGGCGGACCGCTAC GTGATCATGGGGAACCACAGGGATGCGTGGACGTACGGAGCAGTCGATCCAAACAGCGGGACTGCTGCTTTGCTCGACATTGCTCGAAGATTCTCGAACA TGCTGCGAAATGGATGGAGGCCTCGACGAACCATCGTGCTTTCCAGCTGGGACGGGGAAGAGTTTGGGATGGTAGGGTCCACGGAATGGGTTGAACAGAA TCTGGTGAATTTGGGAGGGAAAGCAGTGGCCTATCTGAATGTTGACTGTGCTGTTCAAGGTGCGGGTTTCAATGCTGCTTCGACTCCTCAGCTCGACAAT CTTCTTTTCGAGGTTACGCGGAAGGTGAAGGATCCTGATGTTGCAGGTGCCATGTTGTATGATAAGTGGGCATCCATGAACCAAGCTACTAGTATCGAAA GGCTTAGTGGAGCGTTCTCCGATTTCGCTCCGTTTCTGCAACACGGAGGGATTCCTTCAGCTGACATATATTATGGAAAAGCAGACTTTCCAGTCTATCA CACTGCATTCGACTCGTATGATTGGGTGGTAAAGCATGCCGATCCACTCTTTCATCGTCATGTTGCTGTTGCTGATGTTTGGGGATTGGTAGCACTCCGT TTGGCTGATGATCCCATCATTCCTTTCAACTATCTCTCTTATGCACAGCAGTTATCTAAGTACAAAGAGGAATTGAGCATTTTAGTGGACAGGAGCATTT CTCTTCACCCTTTAGTTTCTGCCATTGAACAGCTTGCCTCTGCTGCTAAAGAAGCTGAAATTGAGGCCAAGGTTCTTCGGAAACTAGATGGTAGCGATGG CTTGACGGCATTGAAGCAACGTGCGTTCAACGACAGGCTGATGCTCGCAGAACGAGGATTCCTCGATGCAGATGGACTTCAAGGGAGACATTGGTTTAAG CATCTGATTTACGGACCTCATGGAGACTACCAGAGCAAGCTGGATTTCTTCCCCGGTATAGCAGATGCCATCCATGAACTCTCGACCCAGCCGCGACAGG AAGGTGCTGTTCAGCACGAAGTGTGGCGAGTGTCCAGAGCTATCCAAGGGGCTGCTAATGCTCTTAGAGGCCAGATCCTCCCATGA
AA sequence Show only first row Show all	>Lus10021090 pacid=23182325 polypeptide=Lus10021090 locus=Lus10021090.g ID=Lus10021090.BGIv1.0 annot-version=v1.0 MPHHAYSPSRVAVAAPTHXXXXXGVLAEPVYVNHGSEEDYRALYALGVSVKERVVLVRKGGGGLSRGATVRIAARQGAAAAVLFGGASGVERGTVMNGMG DPLSPGWAAVEGGERLEEKQVSGEKFPLIPSIPISSQAADVILGSLGGPAAPTEWGIGPPGQRVGPGPTLVNLTFLGEKKEARIQNVFAVIRGLEEADRY VIMGNHRDAWTYGAVDPNSGTAALLDIARRFSNMLRNGWRPRRTIVLSSWDGEEFGMVGSTEWVEQNLVNLGGKAVAYLNVDCAVQGAGFNAASTPQLDN LLFEVTRKVKDPDVAGAMLYDKWASMNQATSIERLSGAFSDFAPFLQHGGIPSADIYYGKADFPVYHTAFDSYDWVVKHADPLFHRHVAVADVWGLVALR LADDPIIPFNYLSYAQQLSKYKEELSILVDRSISLHPLVSAIEQLASAAKEAEIEAKVLRKLDGSDGLTALKQRAFNDRLMLAERGFLDADGLQGRHWFK HLIYGPHGDYQSKLDFFPGIADAIHELSTQPRQEGAVQHEVWRVSRAIQGAANALRGQILP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54720		MFO1, HPT, COP2...	PRIMORDIA TIMING, Multifolia, ...		Lus10021090 [exp]	0	1
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10010509 [exp]	7.5	0.9069
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10003686 [exp]	10.0	0.8712
AT4G28650			Leucine-rich repeat transmembr...		Lus10025943 [exp]	14.2	0.8798
AT1G13690		ATE1	ATPase E1 (.1)		Lus10026675 [exp]	17.3	0.7599
AT5G19200		TSC10B	TSC10B, NAD(P)-binding Rossman...		Lus10010510 [exp]	18.7	0.8733
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10015634 [exp]	23.7	0.8684
AT5G57880		MPS1, ATPRD2	ARABIDOPSIS THALIANA PUTATIVE ...		Lus10010784 [exp]	27.0	0.8237
AT5G25060			RNA recognition motif (RRM)-co...		Lus10042420 [exp]	28.2	0.8305
AT5G38970		ATBR6OX, CYP85A...	brassinosteroid-6-oxidase 1 (....		Lus10034377 [exp]	29.9	0.8691
AT2G28560		ATRAD51B, RAD51...	DNA repair (Rad51) family prot...		Lus10038467 [exp]	32.0	0.8653

Compare expression of checked genes

Lus10021090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.