Plant FIBer expression Database

Lus10021091 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G06590 182 / 1e-55 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G064200
[exp]
241 / 2e-78 AT5G06590 299 / 7e-101 unknown protein
PFAM info
Representative CDS sequence
>Lus10021091 pacid=23182429 polypeptide=Lus10021091 locus=Lus10021091.g ID=Lus10021091.BGIv1.0 annot-version=v1.0
ATGGAAGAGCTGATGTCTGCGTTCGGGCAAAGTTTAAGCTCTTTCTGCAACCATCTCTCAGCCAGCTGCGATGGTCTCAAGCAGTCGGTCGATCGCCGTC
CTGTTCCTCTAGATTCGGCGTCGTCTACTTTCATCCACAATTTAAACAGCCGGGTATCCGCCGCCGGCAGCGATTTGAACCTCCTCGATTCAATGTCCTT
CGGCACCGTCTCTTTCGAGGAGCTGCTAGGTCACTGCAACGAAGTTTACAAAAAGAATCAGAGTGATGTTCTTGAACTTGAAGATCGACTACGGAGCTAT
GGCTACATCCCCGAACCTGAGATTGATGATGAAGATGAGGATTTGGCGAGCTCAACAGTTCTGGGCTCTGAACCTAACGATGGAATAGACTATTCTCCTT
GCGAGCTTCCAATTGCAAAGAGCGTGTTTATCAAGAGTTTGGAAGACGATTCACTAATGGATGAATCACTGAGCTTGAAGAGTTTTGGACTTTCAGAAGT
TTGCCTCGCCAGTTTAGCCAGTGGTGGTAATGGTGAATCCAGTCCTCCGGAAATACCTGTCAGGGAGCCAGTGAAGTGTGACAGCCCCTCGATGCATGAT
GTGAGTATGACAAGCCAAGCTGCCTCAAACCATTCAGTAGCACAGGAAGGAGGCGAGTCAGAAGGCTGTCATGAGCCAGAGAATGATTTGAACCGAGAAA
TACAGTTGTCAAGGGAGGACTACGAAGGTCTTCTTTCATACATGAAAATGTTAACATCATGGGAGGTAAGCAGTTCCGGTTTAAGCATTCTTCTATCGAC
ATCACATTTGACTCATGGAACCAAGAAAAGATTGGTTCTTTATGCGGGGAAGAGAGGCACACTTGCTTTCTTAAGCTGA
AA sequence
>Lus10021091 pacid=23182429 polypeptide=Lus10021091 locus=Lus10021091.g ID=Lus10021091.BGIv1.0 annot-version=v1.0
MEELMSAFGQSLSSFCNHLSASCDGLKQSVDRRPVPLDSASSTFIHNLNSRVSAAGSDLNLLDSMSFGTVSFEELLGHCNEVYKKNQSDVLELEDRLRSY
GYIPEPEIDDEDEDLASSTVLGSEPNDGIDYSPCELPIAKSVFIKSLEDDSLMDESLSLKSFGLSEVCLASLASGGNGESSPPEIPVREPVKCDSPSMHD
VSMTSQAASNHSVAQEGGESEGCHEPENDLNREIQLSREDYEGLLSYMKMLTSWEVSSSGLSILLSTSHLTHGTKKRLVLYAGKRGTLAFLS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G06590 unknown protein Lus10021091
[exp]
0 1
AT3G04560 unknown protein Lus10022011
[exp]
3.0 0.8814
AT2G39810 HOS1 HIGH EXPRESSION OF OSMOTICALLY... Lus10010990
[exp]
3.0 0.9200
AT1G04230 Protein of unknown function (D... Lus10039411
[exp]
3.5 0.8775
AT1G55150 DEA(D/H)-box RNA helicase fami... Lus10015627
[exp]
3.7 0.8827
AT1G29370 Kinase-related protein of unkn... Lus10004604
[exp]
4.2 0.8999
AT3G53110 LOS4 LOW EXPRESSION OF OSMOTICALLY ... Lus10014393
[exp]
4.5 0.9121
AT3G11710 ATKRS-1 lysyl-tRNA synthetase 1 (.1) Lus10001440
[exp]
7.7 0.8922
AT1G55150 DEA(D/H)-box RNA helicase fami... Lus10037646
[exp]
8.1 0.8675
AT4G36930 bHLH SPT, bHLH024 SPATULA, basic helix-loop-heli... Lus10024811
[exp]
8.7 0.8506
AT1G25540 MED25, PFT1 PHYTOCHROME AND FLOWERING TIME... Lus10034282
[exp]
11.0 0.8636

Lus10021091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.