Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58460 525 / 0 ATRBL15 RHOMBOID-like protein 15 (.1.2) AT2G18390 317 / 7e-105 HAL, ARL2, TTN5, ATARLC1 TITAN 5, HALLIMASCH, ARF-LIKE 2, ADP-ribosylation factor family protein (.1) AT2G24765 142 / 4e-39 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT5G17060 142 / 5e-39 ATARFB1B ADP-ribosylation factor B1B (.1) AT1G10630 141 / 9e-39 ATARFA1F ADP-ribosylation factor A1F (.1) AT2G47170 141 / 1e-38 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT5G14670 141 / 1e-38 ATARFA1B ADP-ribosylation factor A1B (.1) AT2G15310 141 / 2e-38 ATARFB1A ADP-ribosylation factor B1A (.1) AT3G03120 140 / 2e-38 ATARFB1C ADP-ribosylation factor B1C (.1) AT3G62290 140 / 4e-38 ATARFA1E ADP-ribosylation factor A1E (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017221 [exp] 723 / 0 AT1G03475 557 / 0.0 LESION INITIATION 2, Coproporphyrinogen III oxidase (.1) Lus10026383 [exp] 340 / 4e-114 AT2G18390 317 / 3e-112 TITAN 5, HALLIMASCH, ARF-LIKE 2, ADP-ribosylation factor family protein (.1) Lus10042271 [exp] 158 / 2e-45 AT2G18390 142 / 3e-44 TITAN 5, HALLIMASCH, ARF-LIKE 2, ADP-ribosylation factor family protein (.1) Lus10002817 [exp] 143 / 2e-39 AT2G15310 273 / 1e-94 ADP-ribosylation factor B1A (.1) Lus10031436 [exp] 140 / 2e-38 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10030884 [exp] 141 / 3e-38 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10013021 [exp] 143 / 6e-38 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10009571 [exp] 140 / 6e-38 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1) Lus10001524 [exp] 140 / 1e-37 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G197900 [exp] 572 / 0 AT3G58460 561 / 0.0 RHOMBOID-like protein 15 (.1.2) Potri.007G024800 [exp] 328 / 3e-109 AT2G18390 326 / 1e-115 TITAN 5, HALLIMASCH, ARF-LIKE 2, ADP-ribosylation factor family protein (.1) Potri.018G013700 [exp] 147 / 9e-41 AT2G24765 336 / 6e-120 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.006G267800 [exp] 144 / 9e-40 AT2G24765 333 / 8e-119 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.008G100000 [exp] 144 / 1e-39 AT1G10630 366 / 1e-131 ADP-ribosylation factor A1F (.1) Potri.010G152600 [exp] 143 / 3e-39 AT1G10630 365 / 4e-131 ADP-ribosylation factor A1F (.1) Potri.018G096077 [exp] 142 / 3e-39 AT2G24765 354 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.013G005500 [exp] 142 / 4e-39 AT5G14670 372 / 4e-134 ADP-ribosylation factor A1B (.1) Potri.013G088800 [exp] 142 / 4e-39 AT5G17060 370 / 9e-133 ADP-ribosylation factor B1B (.1) Potri.006G171500 [exp] 141 / 8e-39 AT2G24765 353 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [flax] [poplar] Rhomboid-like PF01694 [flax] [poplar] Rhomboid Rhomboid family CL0023 [flax] [poplar] P-loop_NTPase PF00025 [flax] [poplar] Arf ADP-ribosylation factor family CL0214 [flax] [poplar] UBA PF00627 [flax] [poplar] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Lus10021092 pacid=23182400 polypeptide=Lus10021092 locus=Lus10021092.g ID=Lus10021092.BGIv1.0 annot-version=v1.0 ATGTGGATTTGGAATCTCGTCGGAATGATGTTGTTCTGTAAGCTTGCGTTGCTAGCTGCAGAAGATTCTCACTCCCGTCTCTTCCGTTTACATTTGTTAC ATGGAGCTCCCTCCATAGATCTAGATATGCAAAAGGCCTTTGCTTTCTCTAGGGGTTTGCCTCCCTATTCCCATTTAGTCCAGGCCAGAAATCATGAGAC GATTAGTATTTCTGAGAGCAAGCTTGTCTACAAGAGTTGGGCAGTGGTGGGAAAGCATTCCTTTCCTTACGCGGTGGTGGTTGTTTGTGGGGCTATCTAC TTGGTCTGCCTCTTGTTTGGATATGACTCCTTTTATGAAATCTGTTTCCTGCCATCTGCTGTTATATCAAGATTTCAAGTTTACAGGATCTTTACTTCCA TTGTATTTCATGGCTCCCTGCTTCATGTTTTGTTCAACATGCTGGCAATGGTGCCTTTGGGTTCAGAACTGGAGAGAATCATGGGATCTGTTCGATTGTT CTATGTGACCGTTTTATTGGCTATAAGCAATGCGAGTCTCCATCTTGTTATAGCCCTGTTAGTAGCTCACAACCCCTTCCGCCCATATCCGGAGCTGATG CATGAGTGTGCAATAGGCTTCTCGGGAATCTTATTTTCCATGATTGTAATAGAAACAAGTTTGAGTGGAGCCCAGACTAGAAGTGTCTTTGGCCTCTTTA ATGTTCCTGCTAAGTGGTATGCTTTTATCCTGCTGGTAGTGTTCCAGATTCTTATGACGAATGTTTCACTGCTCGGACACCTGTGCGGCATTTTGTCTGG ATTTGCATATACCTATGGTTTATTCAACTTGCTTATACCTGGAACATCCTTCTACTCTGGAATCGAGGCTTCCCCCTGGCTTACTTCTTGTGTGAGGCGA CCTAAGTTCATTTTGTGTACTGGAGGAAATGCTACTGGATATATCCCCACATATTCTGGCCAGAATACATCTTCCAGTGGAATTTTGTCTGGAAATATGT GGAGAAACATTTCGTCATGGATGCCACAGCGAGAAACATCTTCTCAGTCGATGCCAGAGCAAGACAGCAGGTTTCCTGGGAGAGCAAGAACTCTCGCATC CGCACAAAGTCCAATCACTCCATCTGGAAACTCGGATGCAAACCTGCAGGCTAGATTACTTGATGATACCGCCTCAGACCATTCTTCACATTCAGCTGAA AGTGTTGCAAGACAGCAACTTCCCGATGGAAGGAGGTCAGTAACGGATAATGCAGCTGTTCTAGGTAACCCTGCTCCTCATCAGACTCCAGTTGTTTCCG ATGACCAAATACAGAAACTTGTATCCATGGGTTTTGAAAAGACGCAGGTCGAGGTTGCTCTGGCAGCTGCTGATGGAGATATTAACGTCGCAGTCGAAAT TCTTATGAGCCAGCAGCCGCCTATTTGCTTTTTGCTGGTTGCATACTGTCTCCGGTTTCGTCGAGCAGTAAGTTCGTCGGGAGTTTTGCTAAACCATGGG GCTCCTCAGCATCATCAGGAAGATCAAGAGAAAAGAGAAGGAAATGCTGGACTCGACAATTCTGGCAAGACGACGATTGTTCTGAAGATCAACGGAGAAG ACACCAGCGTCATCAGCCCAACCCTCGGCTTCAACATTAAGACCATAACTTACCACAAGTATATGTTGAACATATGGGACGTTGGTGGGCAAAGGACGAT AAGATCATACTGGAGAAACTACTTCGAGCAAACCGATGGGCTGGTTTGGGTCGTGGACAGCTCCGATCTTAGGAGGCTAGGCGATTGCAAGATGGAACTT GATAATCTTTTGAAGGAAGAGAGGTTATCTGGAGCTTCTTTGCTAATACTGGCTAATAAGCAAGACATAAGAGGAGCTCTTACACCTGAAGAAATTGCCA AGGTACTGAACCTGGAGAGCATGGATAAAACCAGACACTGGAATATCGTTGGTTGCAGCGCTTACACGGGTGAAGGGTTGCTTGGCGCCTTTAACTGGCT GGTTCAGGATATAGCCTCTCGAATCTACGTGCTTGACTGA
AA sequence Show only first row Show all	>Lus10021092 pacid=23182400 polypeptide=Lus10021092 locus=Lus10021092.g ID=Lus10021092.BGIv1.0 annot-version=v1.0 MWIWNLVGMMLFCKLALLAAEDSHSRLFRLHLLHGAPSIDLDMQKAFAFSRGLPPYSHLVQARNHETISISESKLVYKSWAVVGKHSFPYAVVVVCGAIY LVCLLFGYDSFYEICFLPSAVISRFQVYRIFTSIVFHGSLLHVLFNMLAMVPLGSELERIMGSVRLFYVTVLLAISNASLHLVIALLVAHNPFRPYPELM HECAIGFSGILFSMIVIETSLSGAQTRSVFGLFNVPAKWYAFILLVVFQILMTNVSLLGHLCGILSGFAYTYGLFNLLIPGTSFYSGIEASPWLTSCVRR PKFILCTGGNATGYIPTYSGQNTSSSGILSGNMWRNISSWMPQRETSSQSMPEQDSRFPGRARTLASAQSPITPSGNSDANLQARLLDDTASDHSSHSAE SVARQQLPDGRRSVTDNAAVLGNPAPHQTPVVSDDQIQKLVSMGFEKTQVEVALAAADGDINVAVEILMSQQPPICFLLVAYCLRFRRAVSSSGVLLNHG APQHHQEDQEKREGNAGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYHKYMLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLGDCKMEL DNLLKEERLSGASLLILANKQDIRGALTPEEIAKVLNLESMDKTRHWNIVGCSAYTGEGLLGAFNWLVQDIASRIYVLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58460		ATRBL15	RHOMBOID-like protein 15 (.1.2...		Lus10021092 [exp]	0	1
AT2G41350		AtAUG1, EMB2819	EMBRYO DEFECTIVE 2819, augmin ...		Lus10034184 [exp]	2.4	0.8482
AT2G02790		IQD29	IQ-domain 29 (.1)		Lus10030784 [exp]	3.3	0.8581
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10042902 [exp]	3.9	0.8173
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10010717 [exp]	4.0	0.8296
AT4G08900		ARGAH1	arginine amidohydrolase 1, arg...		Lus10030288 [exp]	4.0	0.8141
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10041855 [exp]	5.2	0.8464
AT4G17615		ATCBL1, SCABP5,...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10011028 [exp]	5.5	0.8233
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10017884 [exp]	6.9	0.8218
AT2G26680			unknown protein		Lus10019418 [exp]	8.1	0.8380
AT5G46240		KAT1	potassium channel in Arabidops...		Lus10028128 [exp]	10.9	0.7677

Compare expression of checked genes

Lus10021092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.