Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19980 164 / 1e-47 cytomatrix protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017215 [exp] 569 / 0 AT1G19980 187 / 1e-56 cytomatrix protein-related (.1) Lus10034526 [exp] 237 / 4e-76 AT1G19980 137 / 8e-38 cytomatrix protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G239500 [exp] 233 / 4e-74 AT1G19980 246 / 4e-79 cytomatrix protein-related (.1) Potri.002G022200 [exp] 226 / 4e-71 AT1G19980 203 / 2e-62 cytomatrix protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021095 pacid=23182449 polypeptide=Lus10021095 locus=Lus10021095.g ID=Lus10021095.BGIv1.0 annot-version=v1.0 ATGGGTAGCGGGAAGAAGCGGTCGGAGGACCCTTCAGATCGAGCAAAGTGGGATGTGATATATGCCAGTCTGGTGAAACTCATCAAGAAACAACAGTGCC AGCTTGAGACTCTGCTCAGCCAGAAGGAATTCCTTGAAGATCACCTGAATAAGCAGAACGACACTCTGGTTTCCAATCTGCGACTCTACGAACGTCATTT CTCCGAATTGAAGGCACGTCTGGAAGAGAAAGAGATGGAGATACTGATGGAGGCTGCTAAATCTGAATTGCTGGTGGGATTAAAGCAGAGAGAAGCTTTG GTTCTTAAAGTGAAATTGGAAGAAACAGAAGATGAATTGGCAGATTTCAGGGCCTTGTTTGACTACCTGTCTGCTAGCCTAAAAAAAGCTGATGGGAGTG GTGAAGGGAATGAAGGGAGCAAGAGGCGCACAAGGTCATCATCTTCTGCCTCCAAGACGACAAATACAGAACTCGAAAGGCTTAAGCTCAAGTGTGAGAA GCTTGTATCCGAGAAGGACAAGATCTCTAACGAGAAGAGCTTCATATGGAATCAATTCAACAGGTTGGAAACAGAACTAACCCAAAAGCTCAACGAAAAG CAAGCTGAAGTCGATGAAACTAAAGATAAGGTAGCTCAAGTCCACACCACAGTCGAGGAACTTCAATCTTCCAACAACGAAAAGGATGAGACCATTGTAA GTCTGAAAGCAAGAATGTCCGAGATGGTAGAAGAGTCGAATCAGTGGCAAGAGAAGGTGTCCAAGTTGTCACAAGAGTTGAAAGCTCTGAAGAAGCAGAA GTCTGAAGCGGTAATTACACCGGTTTTAATAAGCTGCAAGGAAGTAGCTACAGCTTCAGCCAAGGAAAGTGGTAAAGAAAGAAGAAGAAGACTCCGCGGG TGCAGCGCAACTGTTAAGAAAGAAAACTCATCGCCTTCTGCTGAAAATCTAAGACAGAATGGCAAGAGCAGCAGAAGGTCCAAGAGAAAGGAGAGTGATG ATGCTGATGGTGTTATCATACTGGAATCTCCACCAAAACTGTTCACTGGTTCCTTCCGAGTCCCCAAGCTGAAGATCTCCTCAACTCCTGTCTAG
AA sequence Show only first row Show all	>Lus10021095 pacid=23182449 polypeptide=Lus10021095 locus=Lus10021095.g ID=Lus10021095.BGIv1.0 annot-version=v1.0 MGSGKKRSEDPSDRAKWDVIYASLVKLIKKQQCQLETLLSQKEFLEDHLNKQNDTLVSNLRLYERHFSELKARLEEKEMEILMEAAKSELLVGLKQREAL VLKVKLEETEDELADFRALFDYLSASLKKADGSGEGNEGSKRRTRSSSSASKTTNTELERLKLKCEKLVSEKDKISNEKSFIWNQFNRLETELTQKLNEK QAEVDETKDKVAQVHTTVEELQSSNNEKDETIVSLKARMSEMVEESNQWQEKVSKLSQELKALKKQKSEAVITPVLISCKEVATASAKESGKERRRRLRG CSATVKKENSSPSAENLRQNGKSSRRSKRKESDDADGVIILESPPKLFTGSFRVPKLKISSTPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19980			cytomatrix protein-related (.1...		Lus10021095 [exp]	0	1
AT3G12300			unknown protein		Lus10005383 [exp]	11.0	0.8917
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Lus10021175 [exp]	12.2	0.8857
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042904 [exp]	13.1	0.8886
AT3G22320		RPB5A, NRPD5, N...	RNA POLYMERASE II FIFTH LARGES...		Lus10013639 [exp]	13.5	0.8556
AT1G16760			Protein kinase protein with ad...		Lus10042205 [exp]	15.5	0.8633
AT4G10970			unknown protein		Lus10023075 [exp]	19.2	0.8909
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10042674 [exp]	32.2	0.8824
AT3G06190		ATBPM2	BTB-POZ and MATH domain 2 (.1....		Lus10041235 [exp]	37.8	0.8862
AT3G49640			Aldolase-type TIM barrel famil...		Lus10003486 [exp]	41.2	0.8854
AT1G10800			unknown protein		Lus10037441 [exp]	42.9	0.8819

Compare expression of checked genes

Lus10021095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.