Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56110 754 / 0 NOP56 homolog of nucleolar protein NOP56 (.1) AT3G12860 739 / 0 NOP56-like pre RNA processing ribonucleoprotein (.1) AT3G05060 329 / 9e-107 NOP56-like pre RNA processing ribonucleoprotein (.1) AT5G27120 329 / 2e-106 NOP56-like pre RNA processing ribonucleoprotein (.1) AT5G27140 238 / 1e-72 NOP56-like pre RNA processing ribonucleoprotein (.1) AT1G60170 79 / 2e-15 EMB1220 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) AT3G12850 52 / 5e-07 COP9 signalosome complex-related / CSN complex-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017214 [exp] 910 / 0 AT1G56110 783 / 0.0 homolog of nucleolar protein NOP56 (.1) Lus10033846 [exp] 330 / 1e-106 AT5G27120 758 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10018995 [exp] 327 / 2e-105 AT5G27120 734 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10004143 [exp] 325 / 5e-105 AT5G27120 730 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10001716 [exp] 313 / 4e-100 AT5G27120 722 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10040032 [exp] 237 / 2e-73 AT1G56110 231 / 1e-71 homolog of nucleolar protein NOP56 (.1) Lus10007265 [exp] 135 / 5e-35 AT3G05060 310 / 1e-101 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10029168 [exp] 93 / 7e-20 AT1G60170 707 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Lus10012997 [exp] 93 / 1e-19 AT1G60170 705 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G092900 [exp] 802 / 0 AT3G12860 761 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.012G095400 [exp] 799 / 0 AT1G56110 761 / 0.0 homolog of nucleolar protein NOP56 (.1) Potri.005G045600 [exp] 329 / 3e-106 AT5G27120 768 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.013G032300 [exp] 326 / 5e-105 AT3G05060 737 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.014G102800 [exp] 91 / 4e-19 AT1G60170 610 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Potri.002G176000 [exp] 90 / 7e-19 AT1G60170 591 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08156 [flax] [poplar] NOP5NT NOP5NT (NUC127) domain PF01798 [flax] [poplar] Nop snoRNA binding domain, fibrillarin
Representative CDS sequence Show only first row Show all	>Lus10021096 pacid=23182333 polypeptide=Lus10021096 locus=Lus10021096.g ID=Lus10021096.BGIv1.0 annot-version=v1.0 ATGGTGATGTATTTGCTCTACGAAGCTGCCTCAGGATACAGTCTTTTCCAGGCTCACGGACTCGATGAAATCGGCCAAAACACGGAGGCCGTTCGTACCT CCGTCACCGACATGAATCGCTTCGGCAAAGTAGTCCAGCTCGCCGCGTTTCACCCTTTTGAGTCTGCCCTCGATGCTCTGAACCAGTGTAACTCAGTCTC AGAAGGGGTTATGACTGATGAGCTCAGGAATTTCTTGGAGCTTAATCTCCCTAAAGTGAAAGAAGGGAAGAAGCCCAAGTTCAGTCTGGGTGTTGCCGAG CCGAAAGTTGGGTCACATATCTTGGAAGTGACTAAGATCCCTTGCCAGAGCAATGAACTAGTTCTTGAGCTGCTCCGTGGCGTCCGCCTACATTTTGATC GCTTCATCAAAGACCTAAAGCCTGGAGACTTGGAGAAAGCTCAGCTGGGTCTTGGCCACAGTTACAGTCGAGCAAAAGTGAAGTTCAATGTGAACAGGGT TGACAATATGGTTATCCAAGCCATATTTCTTCTTGATGTTCTGGATAAGGATGTGAATTCATTCTCTATGAGAGTTAGAGAGTGGTACTCGTGGCATTTC CCTGAACTAGTGAAAATTGTCAATGACAACTATCTATATGCAAAGCTTGCTAAGTTCATTGAGGATAAGTCAAAGTTATCTGAAGACAAGCTTTCTGAAT TGACTGAGATTCTTGGTGATGAGGACAAAGCTAAAGAGGTTATTGAAGCGGCAAAAGCTTCTATGGGTCAAGACTTGTCCCCAATTGATCTTATTAATGT TCAGATGTTTGCTCAGAGAGTTATGGAGCTTGCTGAGTACCGGAAGAATCTTCACGAGTATCTCATTGAAAAGATGAATAGCATTGCACCCAATTTGGCT GCACTAATTGGTGAGGTTGTTGGGGCTCGTTTGATATCCCATGCAGGTAGTCTTACGAATCTGGCCAAGTGCCCTTCTTCAACTCTTCAGATTCTTGGTG CAGAGAAGGCACTCTTTAGGGCACTAAAAACCCGAGGAAACACCCCAAAATATGGGTTGATTTTCCATTCATCTTTCATTGGTCGAGCATCAGCCCGCAA CAAGGGACGTATGGCTCGCTATCTTGCAAACAAGTGCTCCATTGCAACTCGTATTGATTGCTTTGCAGATAAGGGTTCGACTGTATTTGGAGAGAAACTA AGGGAACAGGTGGAGGAGCGGCTTGATTTCTATGACAAGGGTGTTGCTCCACGTAAGAACATTGATGTGATGAAAGCTGCTGCTATGGAGACCGAAGATG GTGATACGGAGATTGTCATTGGTTCGATTGCAGATGGTGACACCAAAATGGAAGATAAGCCAACTGATGTTGCAACAAATGGTGATGGTTCAGAGGAGCC TAAATCTGAGAAGAAGAAGAAAAAGAAGGATAAGAGGAAACTAGAGGATGATGCTTCAAATGGTGTTGCTGAGATGGAAGTTGAGGAAGATGCAAAAGAG AAGAAGAAGAAGAAGAAAAAGAAAAGCAACTCTGACAATGGTGACGAAGTAGCAGAAGCTGATGCTGGTGAAGCGAAAAAGAAGAAGAAGAAGAAGAACA AGGATTAA
AA sequence Show only first row Show all	>Lus10021096 pacid=23182333 polypeptide=Lus10021096 locus=Lus10021096.g ID=Lus10021096.BGIv1.0 annot-version=v1.0 MVMYLLYEAASGYSLFQAHGLDEIGQNTEAVRTSVTDMNRFGKVVQLAAFHPFESALDALNQCNSVSEGVMTDELRNFLELNLPKVKEGKKPKFSLGVAE PKVGSHILEVTKIPCQSNELVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDVLDKDVNSFSMRVREWYSWHF PELVKIVNDNYLYAKLAKFIEDKSKLSEDKLSELTEILGDEDKAKEVIEAAKASMGQDLSPIDLINVQMFAQRVMELAEYRKNLHEYLIEKMNSIAPNLA ALIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIATRIDCFADKGSTVFGEKL REQVEERLDFYDKGVAPRKNIDVMKAAAMETEDGDTEIVIGSIADGDTKMEDKPTDVATNGDGSEEPKSEKKKKKKDKRKLEDDASNGVAEMEVEEDAKE KKKKKKKKSNSDNGDEVAEADAGEAKKKKKKKNKD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56110		NOP56	homolog of nucleolar protein N...		Lus10021096 [exp]	0	1
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Lus10023255 [exp]	1.0	0.9637
AT1G69070			unknown protein		Lus10019174 [exp]	2.4	0.9612
AT3G59670			unknown protein		Lus10008349 [exp]	2.4	0.9437
AT5G53480			ARM repeat superfamily protein...		Lus10041453 [exp]	3.0	0.9567
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10013988 [exp]	4.5	0.9449
AT5G10920			L-Aspartase-like family protei...		Lus10032846 [exp]	5.3	0.9542
AT3G49990			unknown protein		Lus10010625 [exp]	7.3	0.9084
AT4G26600			S-adenosyl-L-methionine-depend...		Lus10023095 [exp]	10.5	0.9378
AT5G07900			Mitochondrial transcription te...		Lus10002883 [exp]	11.2	0.8875
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10042305 [exp]	12.5	0.9378

Compare expression of checked genes

Lus10021096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.