Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18420 76 / 3e-19 Gibberellin-regulated family protein (.1) AT1G75750 74 / 1e-18 GASA1 GAST1 protein homolog 1 (.1.2) AT4G09600 65 / 3e-15 GASA3 GAST1 protein homolog 3 (.1) AT1G22690 59 / 1e-12 Gibberellin-regulated family protein (.1.2.3) AT5G14920 53 / 2e-09 Gibberellin-regulated family protein (.1.2) AT2G39540 42 / 3e-06 Gibberellin-regulated family protein (.1) AT4G09610 40 / 1e-05 GASA2 GAST1 protein homolog 2 (.1) AT2G14900 40 / 2e-05 Gibberellin-regulated family protein (.1) AT5G59845 39 / 2e-05 Gibberellin-regulated family protein (.1) AT1G10588 39 / 3e-05 Gibberellin-regulated family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017212 [exp] 103 / 2e-30 AT1G75750 107 / 3e-32 GAST1 protein homolog 1 (.1.2) Lus10024338 [exp] 75 / 5e-19 ND 78 / 3e-20 Lus10025962 [exp] 64 / 9e-15 AT4G09600 87 / 1e-23 GAST1 protein homolog 3 (.1) Lus10014262 [exp] 61 / 3e-13 AT4G09600 86 / 7e-23 GAST1 protein homolog 3 (.1) Lus10034524 [exp] 59 / 1e-12 AT1G75750 94 / 3e-26 GAST1 protein homolog 1 (.1.2) Lus10009421 [exp] 60 / 2e-12 AT1G22690 90 / 1e-23 Gibberellin-regulated family protein (.1.2.3) Lus10039443 [exp] 59 / 6e-12 AT5G14920 103 / 2e-27 Gibberellin-regulated family protein (.1.2) Lus10033145 [exp] 54 / 6e-11 AT1G75750 81 / 2e-21 GAST1 protein homolog 1 (.1.2) Lus10024791 [exp] 42 / 4e-06 AT5G59845 114 / 5e-35 Gibberellin-regulated family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G239000 [exp] 82 / 1e-21 AT2G18420 117 / 6e-36 Gibberellin-regulated family protein (.1) Potri.005G239100 [exp] 76 / 1e-19 AT1G75750 112 / 1e-33 GAST1 protein homolog 1 (.1.2) Potri.002G022600 [exp] 74 / 1e-18 AT1G75750 110 / 4e-33 GAST1 protein homolog 1 (.1.2) Potri.002G022500 [exp] 74 / 3e-18 AT2G18420 99 / 2e-28 Gibberellin-regulated family protein (.1) Potri.012G076700 [exp] 69 / 1e-16 AT2G18420 85 / 9e-23 Gibberellin-regulated family protein (.1) Potri.002G022700 [exp] 68 / 2e-16 AT1G75750 94 / 1e-26 GAST1 protein homolog 1 (.1.2) Potri.015G071500 [exp] 66 / 1e-15 AT5G14920 90 / 5e-23 Gibberellin-regulated family protein (.1.2) Potri.013G113400 [exp] 57 / 5e-12 AT2G18420 96 / 2e-27 Gibberellin-regulated family protein (.1) Potri.019G083900 [exp] 57 / 6e-12 AT1G22690 103 / 1e-29 Gibberellin-regulated family protein (.1.2.3) Potri.001G350600 [exp] 57 / 6e-11 AT5G14920 103 / 1e-26 Gibberellin-regulated family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02704 [flax] [poplar] GASA Gibberellin regulated protein
Representative CDS sequence Show only first row Show all	>Lus10021098 pacid=23182319 polypeptide=Lus10021098 locus=Lus10021098.g ID=Lus10021098.BGIv1.0 annot-version=v1.0 ATGGCTTTCTCAAAGTTAATCATGGCTTCCCTTCTTCTCTCCCTCGTCGTCCTCCAGCTTACCCTGCATGCTGCTGCTGCTGCTGCTGCTGATAGCTACC CCGGTACTCCAACCACCGACTGTAAGGGCGCGTGCAAGGCGAGGTGTCGGCTGTCGAGCAGGCCAAACCTATGCCACAGGGCTTGTGGAACTTGCTGCAA AAGATGCAGCTGCGTCCCTCCCGGTACCGCCGGCAACTATGACAAGAGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAG
AA sequence Show only first row Show all	>Lus10021098 pacid=23182319 polypeptide=Lus10021098 locus=Lus10021098.g ID=Lus10021098.BGIv1.0 annot-version=v1.0 MAFSKLIMASLLLSLVVLQLTLHAAAAAAADSYPGTPTTDCKGACKARCRLSSRPNLCHRACGTCCKRCSCVPPGTAGNYDKSXXXXXXXXXX

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18420			Gibberellin-regulated family p...		Lus10021098 [exp]	0	1
AT1G78860			D-mannose binding lectin prote...		Lus10022495 [exp]	4.6	0.9206
AT5G44390			FAD-binding Berberine family p...		Lus10001965 [exp]	7.3	0.9293
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10015519 [exp]	8.5	0.9215
AT3G51660			Tautomerase/MIF superfamily pr...		Lus10012222 [exp]	13.0	0.8997
AT2G19500		ATCKX2, CKX2	cytokinin oxidase 2 (.1)		Lus10031200 [exp]	16.9	0.8839
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10019457 [exp]	22.7	0.9165
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10029370 [exp]	24.6	0.8888
AT4G29700			Alkaline-phosphatase-like fami...		Lus10000041 [exp]	26.7	0.9161
AT5G24090		ATCHIA	chitinase A (.1)		Lus10027560 [exp]	28.1	0.8820
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10019102 [exp]	33.6	0.9136

Compare expression of checked genes

Lus10021098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.