Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02020 86 / 2e-21 SIS Salt Induced Serine rich, unknown protein AT2G39855 65 / 1e-13 unknown protein AT5G59080 61 / 3e-12 unknown protein AT3G55646 57 / 2e-10 unknown protein AT3G46880 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017209 [exp] 178 / 6e-57 AT3G09270 93 / 5e-23 glutathione S-transferase TAU 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G092400 [exp] 122 / 8e-36 AT5G02020 122 / 2e-36 Salt Induced Serine rich, unknown protein Potri.009G038300 [exp] 84 / 8e-21 AT5G59080 104 / 2e-29 unknown protein Potri.008G061700 [exp] 58 / 7e-11 AT3G55646 75 / 7e-18 unknown protein Potri.010G196400 [exp] 54 / 1e-09 AT2G39855 86 / 4e-22 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021101 pacid=23182450 polypeptide=Lus10021101 locus=Lus10021101.g ID=Lus10021101.BGIv1.0 annot-version=v1.0 ATGGAGGGAAAGAAGCAGCTTCCAGAATCCCAATCCTCTTCTTCTTCGTCTTCATCATTCACATCTGAGCTGTTTGGTTCCAAGGATTCTTCCTCCTTCT CTTCCTCGTCTGGGATTTTCGGATCCATATTCGCTCCTTCCTCCAAGGTGATGGGGAGAGAGTCATTGCGTCCTGAGATGGATGATCCTACAAACCAGCC ATGGAGCACCGCCAAACTTGGAGCTCCAGATTATAGTAGTGGGAGAAGCTATGAAGGTGACAGTCAGAACAATTCGTATAATAGGGATATGAACTCGATT TACCAAGAGCAAAGAGTACAGCCATGCCACCTCAGTTCTTCAATCTATTATGGTGGCCAAGATAATGTTTATCATCATCCTCAAAGTAACCAGAGCACTA CCACCTACTCAACTTTTAAGAAAGATGGAACTGAAGACGATTCTGGGGGTGCTTCAAGAGGGAATTGGTGGCAGGATCGGCCTTTTGCTGCACTTTTCCA TATGCTCACCTCACCTAGGGTCTATAGACAAGTTAGCTTTTAG
AA sequence Show only first row Show all	>Lus10021101 pacid=23182450 polypeptide=Lus10021101 locus=Lus10021101.g ID=Lus10021101.BGIv1.0 annot-version=v1.0 MEGKKQLPESQSSSSSSSSFTSELFGSKDSSSFSSSSGIFGSIFAPSSKVMGRESLRPEMDDPTNQPWSTAKLGAPDYSSGRSYEGDSQNNSYNRDMNSI YQEQRVQPCHLSSSIYYGGQDNVYHHPQSNQSTTTYSTFKKDGTEDDSGGASRGNWWQDRPFAALFHMLTSPRVYRQVSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02020		SIS	Salt Induced Serine rich, unkn...		Lus10021101 [exp]	0	1
AT1G15740			Leucine-rich repeat family pro...		Lus10025751 [exp]	1.0	0.9635
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10017209 [exp]	1.4	0.9633
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10041671 [exp]	1.7	0.9516
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10004130 [exp]	3.5	0.8982
AT3G19860	bHLH	bHLH121	basic Helix-Loop-Helix 121, ba...		Lus10028456 [exp]	4.4	0.8754
AT5G19120			Eukaryotic aspartyl protease f...		Lus10021939 [exp]	5.7	0.9313
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Lus10020178 [exp]	6.3	0.9280
AT1G72100			late embryogenesis abundant do...		Lus10000723 [exp]	6.5	0.9147
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10024067 [exp]	6.5	0.9103
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Lus10021511 [exp]	7.3	0.8863

Compare expression of checked genes

Lus10021101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.