Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59050 60 / 1e-09 unknown protein AT4G02830 54 / 3e-08 unknown protein AT3G54000 51 / 8e-07 unknown protein AT2G39870 41 / 0.0008 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017206 [exp] 189 / 7e-57 AT3G54000 59 / 9e-10 unknown protein Lus10004675 [exp] 70 / 5e-13 AT2G39870 100 / 1e-23 unknown protein Lus10021106 [exp] 62 / 2e-12 ND / Lus10040247 [exp] 67 / 4e-12 AT2G39870 100 / 9e-24 unknown protein Lus10042573 [exp] 62 / 5e-11 AT4G02830 66 / 2e-13 unknown protein Lus10014664 [exp] 61 / 1e-10 AT4G02830 74 / 2e-16 unknown protein Lus10001433 [exp] 57 / 6e-09 AT5G59050 80 / 9e-17 unknown protein Lus10001626 [exp] 56 / 1e-08 AT5G59050 77 / 4e-16 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G105000 [exp] 144 / 7e-39 AT3G54000 73 / 4e-14 unknown protein Potri.006G093000 [exp] 117 / 5e-29 AT3G54000 79 / 9e-16 unknown protein Potri.010G195800 [exp] 112 / 3e-27 AT3G54000 94 / 3e-21 unknown protein Potri.008G062200 [exp] 102 / 5e-24 AT2G39870 90 / 9e-20 unknown protein Potri.009G038600 [exp] 76 / 5e-15 AT5G59050 112 / 3e-28 unknown protein Potri.002G053700 [exp] 62 / 5e-11 AT4G02830 99 / 4e-26 unknown protein Potri.005G208800 [exp] 58 / 1e-09 AT4G02830 99 / 4e-26 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021105 pacid=23182320 polypeptide=Lus10021105 locus=Lus10021105.g ID=Lus10021105.BGIv1.0 annot-version=v1.0 ATGGCGCAGAGCTTCGGCGACGGTGAGTTCTGGCTGCCTCCAGCGTTCCTTACCGACGACGACTTATTCACTGAGAAGAAACAGCAGAAGCGTGTGAAGG GCGCGGAAGATTTACTCGGTTTGGAAACCGATTTCACTTCGTCGAACTCCCTCTTCTCGCATCACTTTCCTTTCGGTTTTGGTTCCTTTGGAGTGTCATC GGATCTCAGCTCTCCGGTGGAGTCGGCGGTCAGCTCCACGGAGACGGAGAGTGACGAGGAGGAGGACTTGAGCCGGCGTTTGACTCGCACGACTCTGGAC GACGACTTGTTGTTCTCGACAAAGGGGCGTGTATTGTCTGGATCTCCGCAATCCACGCTGTGTGGGGCCACCGGAAACGGTTGTGGTTGCAGGCCAGGTA CGAACCGGGCCGTCTCATCACAGCCACCGGCGACTTTGGATCTACTCTTTGCTGCCGCCGGCGAGGTAGCCAAGATGAAAGCCAACGGTGGCGGTGCTTT CGGGGAACAGAGTAGAGGACTGTTAGGCGGAGGTCCACCACCGCCAAGGGAACCATCTCCAGTCACTGTCCCGTTGAAAATTTCTGACCCTCAAGGTTTT GGATTTTACCAGCAGCCGTCTCTGTCTTACCATCAGTTGCAGGCATCTCAATTCCAGCAGCTGCGGCAGCAACAATTGATGAAGCAACAGAGCTCTGGAA TCTGGAAGGCTGCCGGCCTATACCAAAAGCAACAGAGTCCGTCACTGGTCCACCACCACCATGACAGAGGGTTATCCAACCCTGCATGGCCGTCGTTGCA GCAGGCTCAGCAGCAAGGAAACGGCGTCGGTTCGGGTATGCGGGCGGGTTTTCTTGGGAATCCCGCTGGTGGGAAAAGAGAATGTGCTGGTACTGGTGTT TTCTTGCCTCGTAGGACTGGTGCTCCAGCTGAGCCCAGGAAGAAGTCGGTTGGTTCAACCACCGTTCTGCTTCCTGCAAGAGTTGTTCAAGCCCTGGAAT TGAACCTTGACAAAATGGCTGTTCATCAGGCTTATCATCGTCGTATTGTTCCTAGTGGCCGTTTTACATTTGAAAACGATGCAATGGTTGCAAGGAATGG CAATGGTGGTGTCGATTTCGGTTCGAACGAGAAGCAGAGCTGGAGCAGCAGATCACCACCTGGAATGCAGGTGGAAGCTGGGTTACCACAAGAATGGACT TACTGA
AA sequence Show only first row Show all	>Lus10021105 pacid=23182320 polypeptide=Lus10021105 locus=Lus10021105.g ID=Lus10021105.BGIv1.0 annot-version=v1.0 MAQSFGDGEFWLPPAFLTDDDLFTEKKQQKRVKGAEDLLGLETDFTSSNSLFSHHFPFGFGSFGVSSDLSSPVESAVSSTETESDEEEDLSRRLTRTTLD DDLLFSTKGRVLSGSPQSTLCGATGNGCGCRPGTNRAVSSQPPATLDLLFAAAGEVAKMKANGGGAFGEQSRGLLGGGPPPPREPSPVTVPLKISDPQGF GFYQQPSLSYHQLQASQFQQLRQQQLMKQQSSGIWKAAGLYQKQQSPSLVHHHHDRGLSNPAWPSLQQAQQQGNGVGSGMRAGFLGNPAGGKRECAGTGV FLPRRTGAPAEPRKKSVGSTTVLLPARVVQALELNLDKMAVHQAYHRRIVPSGRFTFENDAMVARNGNGGVDFGSNEKQSWSSRSPPGMQVEAGLPQEWT Y

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54000			unknown protein		Lus10021105 [exp]	0	1
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Lus10017050 [exp]	6.1	0.8499
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Lus10021370 [exp]	12.0	0.7894
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10020772 [exp]	19.9	0.7842
					Lus10039781 [exp]	22.1	0.7848
AT3G62270			HCO3- transporter family (.1)		Lus10032651 [exp]	22.2	0.7495
					Lus10002111 [exp]	24.5	0.7744
AT4G19230		CYP707A1	"cytochrome P450, family 707, ...		Lus10035685 [exp]	27.4	0.7266
AT3G20600		NDR1	non race-specific disease resi...		Lus10043067 [exp]	29.0	0.7789
AT5G26250			Major facilitator superfamily ...		Lus10041212 [exp]	29.7	0.7753
AT3G61180			RING/U-box superfamily protein...		Lus10012427 [exp]	30.0	0.7764

Compare expression of checked genes

Lus10021105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.