Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59040 87 / 1e-22 COPT3 copper transporter 3 (.1) AT2G26975 86 / 3e-22 Ctr copper transporter family (.1) AT2G37925 84 / 3e-21 COPT4 copper transporter 4 (.1) AT3G46900 83 / 7e-21 COPT2 copper transporter 2 (.1) AT5G59030 82 / 1e-20 COPT1 copper transporter 1 (.1) AT5G20650 54 / 4e-10 COPT5 copper transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017205 [exp] 248 / 2e-86 AT2G26975 87 / 2e-22 Ctr copper transporter family (.1) Lus10023045 [exp] 122 / 3e-36 AT2G26975 84 / 2e-21 Ctr copper transporter family (.1) Lus10032428 [exp] 112 / 2e-32 AT2G26975 87 / 1e-22 Ctr copper transporter family (.1) Lus10040726 [exp] 88 / 8e-23 AT2G26975 138 / 2e-42 Ctr copper transporter family (.1) Lus10016464 [exp] 86 / 8e-22 AT5G59030 151 / 1e-47 copper transporter 1 (.1) Lus10021108 [exp] 83 / 6e-21 AT2G37925 120 / 2e-35 copper transporter 4 (.1) Lus10017204 [exp] 57 / 3e-11 AT5G59030 88 / 3e-23 copper transporter 1 (.1) Lus10012501 [exp] 54 / 5e-10 AT5G20650 177 / 5e-58 copper transporter 5 (.1) Lus10007092 [exp] 52 / 3e-09 AT5G20650 169 / 6e-55 copper transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G093200 [exp] 129 / 4e-39 AT3G46900 89 / 6e-23 copper transporter 2 (.1) Potri.009G038700 [exp] 100 / 5e-28 AT2G26975 133 / 2e-40 Ctr copper transporter family (.1) Potri.006G093300 [exp] 86 / 4e-22 AT2G37925 114 / 3e-33 copper transporter 4 (.1) Potri.009G038800 [exp] 86 / 6e-22 AT5G59030 148 / 4e-46 copper transporter 1 (.1) Potri.001G246000 [exp] 79 / 2e-19 AT5G59030 134 / 9e-41 copper transporter 1 (.1) Potri.006G140700 [exp] 61 / 2e-12 AT5G20650 151 / 7e-48 copper transporter 5 (.1) Potri.006G219200 [exp] 53 / 2e-09 AT5G20650 140 / 1e-43 copper transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04145 [flax] [poplar] Ctr Ctr copper transporter family
Representative CDS sequence Show only first row Show all	>Lus10021107 pacid=23182300 polypeptide=Lus10021107 locus=Lus10021107.g ID=Lus10021107.BGIv1.0 annot-version=v1.0 ATGGACATGGGTTCGAATTCGACGGACGATACTTCGATGCACAATAGCTTCTTCTGGGGGAAAGACGTGGTCTTGCTCTTCTCCGGATGGCCGGACCACA GTCTCCCTATGTACATTCTAGCATGTTTGTGTGTCTTCTTCATGACGGCTGGTGCAGAGTTCTTGACCCTTGCTCAATCGGTCAAGAGTTCGAAAAGTCC GGCGGTTGGGGCCGCCGTTGAGGCGTGCTTTTATGCGGTCAAGATGGCTCTTTCCTATATGGTCATGTTGGCTGTCATGTCCTTCAATTTGGGGGTCTTC ATCTCTGCCGTCCTCGGCCACTCCCTTGGCCTCTTCATCGTCAAGAGGAACAGTGTGACGCTGTATGAGAGGTTCAATGCCAATGGCCGGAATGGGAGTG GATGA
AA sequence Show only first row Show all	>Lus10021107 pacid=23182300 polypeptide=Lus10021107 locus=Lus10021107.g ID=Lus10021107.BGIv1.0 annot-version=v1.0 MDMGSNSTDDTSMHNSFFWGKDVVLLFSGWPDHSLPMYILACLCVFFMTAGAEFLTLAQSVKSSKSPAVGAAVEACFYAVKMALSYMVMLAVMSFNLGVF ISAVLGHSLGLFIVKRNSVTLYERFNANGRNGSG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59040		COPT3	copper transporter 3 (.1)		Lus10021107 [exp]	0	1
AT1G68630			PLAC8 family protein (.1)		Lus10008890 [exp]	2.4	0.8065
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10030078 [exp]	3.2	0.8115
AT5G27350		SFP1	Major facilitator superfamily ...		Lus10035355 [exp]	4.5	0.8081
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10038593 [exp]	10.4	0.7476
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10021345 [exp]	16.5	0.7383
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Lus10017022 [exp]	19.8	0.7311
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10038141 [exp]	26.7	0.7749
AT3G16150		ASPGB1	asparaginase B1, N-terminal nu...		Lus10024795 [exp]	29.9	0.7764
AT4G21020			Late embryogenesis abundant pr...		Lus10015427 [exp]	31.2	0.6977
AT1G15190			Fasciclin-like arabinogalactan...		Lus10003958 [exp]	33.7	0.7828

Compare expression of checked genes

Lus10021107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.