Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26975 119 / 6e-35 Ctr copper transporter family (.1) AT2G37925 118 / 1e-34 COPT4 copper transporter 4 (.1) AT5G59030 119 / 2e-34 COPT1 copper transporter 1 (.1) AT3G46900 112 / 3e-32 COPT2 copper transporter 2 (.1) AT5G59040 101 / 8e-28 COPT3 copper transporter 3 (.1) AT5G20650 51 / 1e-08 COPT5 copper transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017204 [exp] 176 / 6e-58 AT5G59030 88 / 3e-23 copper transporter 1 (.1) Lus10040726 [exp] 139 / 1e-42 AT2G26975 138 / 2e-42 Ctr copper transporter family (.1) Lus10016464 [exp] 130 / 5e-39 AT5G59030 151 / 1e-47 copper transporter 1 (.1) Lus10016463 [exp] 87 / 1e-22 AT2G26975 92 / 5e-25 Ctr copper transporter family (.1) Lus10021107 [exp] 83 / 9e-21 AT5G59040 87 / 1e-22 copper transporter 3 (.1) Lus10017205 [exp] 82 / 3e-20 AT2G26975 87 / 2e-22 Ctr copper transporter family (.1) Lus10023045 [exp] 74 / 3e-17 AT2G26975 84 / 2e-21 Ctr copper transporter family (.1) Lus10016462 [exp] 71 / 5e-17 AT5G59030 76 / 3e-19 copper transporter 1 (.1) Lus10032428 [exp] 72 / 1e-16 AT2G26975 87 / 1e-22 Ctr copper transporter family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G093300 [exp] 150 / 3e-47 AT2G37925 114 / 3e-33 copper transporter 4 (.1) Potri.009G038700 [exp] 140 / 4e-43 AT2G26975 133 / 2e-40 Ctr copper transporter family (.1) Potri.009G038800 [exp] 135 / 3e-41 AT5G59030 148 / 4e-46 copper transporter 1 (.1) Potri.001G246000 [exp] 124 / 1e-36 AT5G59030 134 / 9e-41 copper transporter 1 (.1) Potri.006G093200 [exp] 99 / 6e-27 AT3G46900 89 / 6e-23 copper transporter 2 (.1) Potri.006G140700 [exp] 55 / 7e-10 AT5G20650 151 / 7e-48 copper transporter 5 (.1) Potri.006G219200 [exp] 49 / 6e-08 AT5G20650 140 / 1e-43 copper transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04145 [flax] [poplar] Ctr Ctr copper transporter family
Representative CDS sequence Show only first row Show all	>Lus10021108 pacid=23182329 polypeptide=Lus10021108 locus=Lus10021108.g ID=Lus10021108.BGIv1.0 annot-version=v1.0 ATGCACACATCCCTAAATTCATCATCGGCGTCGTCACCAATCTCGTCGTCGTGGAACACAACTCCCGCCACGGCGGAGAAGCCGGAGGTCGGGGGTGGAA TTCACGCCCGCGGGAATGCTCTGCTGCACACGAGCTTCTGGTGGGGACACAAGAAAGCCGAAATCCTGTTTCCGGGTTGGCCCGGGTCGGACCCGGGGAT GTACGCCTGCGCACTGATGTTCGTTTTCTCGCTGGCGGTGGCGGTGGAGTGGCTGAGCTACTGCAGCATCGTGAAGCCCGGGACGAGTAGAGTCGCAGCT GGGTTCTTTAAGACCGGGATGTTCGCCGTGCGTGCGGGTCTGTCGTATATGGTTATGCTGGCGGTTATGTCATACAACGGCGGCGTTTTCATCGTGGCGG TGTTGGGCCACGCCGTGGGGTTTGTTCTGTTTGGGAGCTCGGTGTTGTGGAAGTCCGACAAGGTGCCGGATCTTCCCCAGCCCAAATGCTGA
AA sequence Show only first row Show all	>Lus10021108 pacid=23182329 polypeptide=Lus10021108 locus=Lus10021108.g ID=Lus10021108.BGIv1.0 annot-version=v1.0 MHTSLNSSSASSPISSSWNTTPATAEKPEVGGGIHARGNALLHTSFWWGHKKAEILFPGWPGSDPGMYACALMFVFSLAVAVEWLSYCSIVKPGTSRVAA GFFKTGMFAVRAGLSYMVMLAVMSYNGGVFIVAVLGHAVGFVLFGSSVLWKSDKVPDLPQPKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37925		COPT4	copper transporter 4 (.1)		Lus10021108 [exp]	0	1
AT5G22870			Late embryogenesis abundant (L...		Lus10041350 [exp]	1.0	0.9493
AT5G59030		COPT1	copper transporter 1 (.1)		Lus10017204 [exp]	1.7	0.9271
AT4G05220			Late embryogenesis abundant (L...		Lus10006755 [exp]	2.4	0.9443
AT5G35740			Carbohydrate-binding X8 domain...		Lus10039059 [exp]	4.5	0.9150
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10016566 [exp]	11.2	0.8975
AT1G52570		PLDALPHA2	phospholipase D alpha 2 (.1)		Lus10041787 [exp]	13.4	0.9183
AT5G08391			Protein of unknown function (D...		Lus10032032 [exp]	14.5	0.8754
AT1G05610		APS2	ADP-glucose pyrophosphorylase ...		Lus10042456 [exp]	15.7	0.9095
AT1G10380			Putative membrane lipoprotein ...		Lus10036687 [exp]	15.7	0.9095
AT4G16640			Matrixin family protein (.1)		Lus10004728 [exp]	16.5	0.8960

Compare expression of checked genes

Lus10021108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.