Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01030 281 / 8e-83 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) AT2G29510 199 / 2e-53 Protein of unknown function (DUF3527) (.1) AT5G59020 179 / 1e-46 Protein of unknown function (DUF3527) (.1) AT2G37930 152 / 2e-39 Protein of unknown function (DUF3527) (.1) AT1G63520 99 / 2e-21 Protein of unknown function (DUF3527) (.1) AT2G33360 94 / 5e-20 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) AT1G04490 89 / 2e-18 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) AT4G11450 75 / 1e-13 Protein of unknown function (DUF3527) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017200 [exp] 1400 / 0 AT5G01030 229 / 4e-64 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10016455 [exp] 178 / 2e-46 AT5G59020 293 / 2e-87 Protein of unknown function (DUF3527) (.1) Lus10040721 [exp] 177 / 4e-46 AT5G59020 291 / 1e-86 Protein of unknown function (DUF3527) (.1) Lus10023729 [exp] 93 / 3e-19 AT2G33360 355 / 9e-115 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10014479 [exp] 92 / 6e-19 AT2G33360 287 / 4e-91 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10002006 [exp] 58 / 3e-08 AT4G11450 477 / 3e-159 Protein of unknown function (DUF3527) (.1) Lus10035493 [exp] 56 / 2e-07 AT4G11450 462 / 2e-151 Protein of unknown function (DUF3527) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G093600 [exp] 353 / 1e-107 AT5G01030 219 / 6e-60 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.016G105500 [exp] 339 / 3e-102 AT5G01030 257 / 5e-73 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.009G039300 [exp] 236 / 1e-65 AT5G59020 351 / 1e-107 Protein of unknown function (DUF3527) (.1) Potri.001G246200 [exp] 232 / 4e-64 AT5G59020 362 / 9e-112 Protein of unknown function (DUF3527) (.1) Potri.010G066200 [exp] 100 / 1e-21 AT2G33360 333 / 3e-106 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.008G171400 [exp] 94 / 2e-19 AT2G33360 327 / 1e-103 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.003G127500 [exp] 71 / 3e-12 AT4G11450 521 / 2e-176 Protein of unknown function (DUF3527) (.1) Potri.001G104200 [exp] 70 / 5e-12 AT4G11450 530 / 5e-180 Protein of unknown function (DUF3527) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF12043 [flax] [poplar] DUF3527 Domain of unknown function (DUF3527)
Representative CDS sequence Show only first row Show all	>Lus10021110 pacid=23182417 polypeptide=Lus10021110 locus=Lus10021110.g ID=Lus10021110.BGIv1.0 annot-version=v1.0 ATGGAGAAGGCCAATGTGCGATCGTCTGTTCAAGCTGGTGTTACTGTCACAAAACCCTCGAGGGAAATGGAGCTGAGTTTGGATGTCAATAGAATTCCGA GAGGGCGGCGAAATCCCAAGATGGAGAAGGAAACTGACCACCAAGTTCAAGTCAAGGAGATGTTGAAGTATCAGAGTAAGCTGAAAGGAAAGAGTTGTTC TGTTCCGCCTTGCCATGGTGCTGGCACTGATCCTGTAAACAGCGAGAGATCCCGAAAGAGCCAACATGAGTCTGTCAAGGCACCTAGGTTAGAAACTGGG GAGGTTGTGAGGTACATGTCTAATGTGCCTGGATTTCTCCAGCGGATGGAGAAAGGGGAGGATATACAAGGTAAGGCTTTGAATGTAGGAGTTGTTGATT GGAGACGTCTGGAAAAACTGAAGGGGGGCCAACAGGTTGGAGCACAAAGTGAGGGCAATGGTCGAATGCCGGCTAGTGGTATGCATATGTTCACTCGTTC TCAAGATTTTGAATCAACTTCGAAGGGCAGTTTAGATGGTCAGAAAATAAGAGGTTGGAACCACAAGCCCTTTGATAAAAAGGTCCATTCAAAGGTGGGG AGCAGCTCACTTGATCCAGCAAGTAGTGAAGGCCAAATAGGACTCCGTGAAAATTCTATTGCTTTTTCTGGTGATTCCAAGAGACATCAGGCAAGAAAAA CTTCAGGTGTAAAAGTGGTTGCAGATCGGAGAAGCTCACGTAGCTTTACGGCATCATCATCTGAGATGAAAGGCTGTGACGTTTCACTCGTTCCAAAGGA TAAGAATATGGGTCATCGCAAATTTGAAAACAAAGCAGAGGAGGCTTCACGAAATTCAACAACCATGGTTTCTCCAGAGGGTAAACTTAAACATGGGGAA AAAGTCGTTCTTCTTGTGCCCAGAAAACGTTCCCAAGGTAGCTTTTCTGAGGAGCCTCTAGCATTACCATCTGGAAGTGAGAAAATTGCATATCTCAATG GAATTTCAGACGATTGTTCTCACGATCGCAGGTCATCCATGATCTCTTCAGATAATCCTCGTTCGTTTCCTCTGCCTCCAAGACTTGACACTAGCAAGTT GGTGCATGGTGATAGTATGTTGGCTACTGCACCTCGTACAGAATTGTCTTCTGCCAAGCACATTAGTAAGCGTTCTTTGGACAACTTTAAGTTTGCAAGA GATTACGATTCAGAAACTCAAACTGTGTTGGACACAGTTAGGAAAGATAGGCATCCATCTCCAACTCGAGGCTTCCCCTTTACCTTAGGACGGTTGACCA GAAGTTTCAGTTCAAAGGAAAGTGCAACCATCCCACCGCTTCGGTCTACCTACGAGTCCATGAAATCTGGTCCTGTGACATCTCAAAGTTGTGCTGGTTT AAGTATCCCTACAGGAGAGATTACAACTGGTCCCAGCAGAGCTAAATCAAGCCCGCTAAGAAGATTACTAGATCCATTGTTCAAGTCTAAGGCTTCGAAG TCTACTAAAGAGAACGCTAATTTCTCAGACTTGGAGCAGACAAATGACAACGAGTCAATTCAGCACGAGAAGCACGAGGAAGCAAACATCCAGGCCGTTT TGCATGTTACAGTTAACAACGGACTCCCTGTATTCAAGTTTCTGGTCGACAAAGTTGATGGCAAAGCCAGCATTCTTGCAGCAACCAAGAATGTATCCTC GCCCAGAAAGAGCAATTCAGGATGCAGTTATACGTTCTATTCGATCGACGAAATCAAGAAAAGAAGTAACAGCTGGATAAGCCGAGGTTCCAAAGATGAA AGGTGCGAGTACACGTACAATGTGATTGGCCAAATGAACGTCAACCACTCCCCTTTTCTAGGCCTAACAGGAGAGTATCTCACTGGCCACGAAACTTTCA GCGAGTATGTGCTGTTTGGGTTGGAGCTGGGGAAAAAATTAGGTGAAGCATCATCAAAGCTCAGGCCAAGCAGGGAGCTTGGAGCAGTAATTGTGAGAAC TCACTGTGTAAACATTGGCACGCAGAAGCAAGGGGATTCGGCACGAAGTGAACAGTCTAGTAATGTGACAGCCATACTCCCTGCTGCAGTACATGGTTTA CCAGAAAAGGGAGGTCCTTGGCCGTTGATTCAACGGTGGAGATCCGGCGGATCGTGTGATTGCGGAGGTTGGGACGTTGGTTGTGGACTCTGTGTTCTGT CAGCTGCCGTCCAGGTTTCATCCAATGGTTTCCAACTCTTTGCAGAGGGAGGCGGATCTAAAGAGGGAAAGCCAGTGTTCGTTATGAGGCCAGCTGAGAA GGGGATGTACTCGATTGAATTCAACCGGCGAATGTCATTGGTTCAAGCATTCTTCATCTCTGTCACGGTTATACACTCGCAAAAGCCGTCAGATCTTGTG GACTTGACTATGGAGAAGGTTTTCCTTGATACAGATGAACCGGCAAGGAAGATGATTGCAAGAGACATCGGAGCAACTACGAAATTCGCCCCGAGTCCAC CCCTTTCCCCGGTCGGACGGGTCTAG
AA sequence Show only first row Show all	>Lus10021110 pacid=23182417 polypeptide=Lus10021110 locus=Lus10021110.g ID=Lus10021110.BGIv1.0 annot-version=v1.0 MEKANVRSSVQAGVTVTKPSREMELSLDVNRIPRGRRNPKMEKETDHQVQVKEMLKYQSKLKGKSCSVPPCHGAGTDPVNSERSRKSQHESVKAPRLETG EVVRYMSNVPGFLQRMEKGEDIQGKALNVGVVDWRRLEKLKGGQQVGAQSEGNGRMPASGMHMFTRSQDFESTSKGSLDGQKIRGWNHKPFDKKVHSKVG SSSLDPASSEGQIGLRENSIAFSGDSKRHQARKTSGVKVVADRRSSRSFTASSSEMKGCDVSLVPKDKNMGHRKFENKAEEASRNSTTMVSPEGKLKHGE KVVLLVPRKRSQGSFSEEPLALPSGSEKIAYLNGISDDCSHDRRSSMISSDNPRSFPLPPRLDTSKLVHGDSMLATAPRTELSSAKHISKRSLDNFKFAR DYDSETQTVLDTVRKDRHPSPTRGFPFTLGRLTRSFSSKESATIPPLRSTYESMKSGPVTSQSCAGLSIPTGEITTGPSRAKSSPLRRLLDPLFKSKASK STKENANFSDLEQTNDNESIQHEKHEEANIQAVLHVTVNNGLPVFKFLVDKVDGKASILAATKNVSSPRKSNSGCSYTFYSIDEIKKRSNSWISRGSKDE RCEYTYNVIGQMNVNHSPFLGLTGEYLTGHETFSEYVLFGLELGKKLGEASSKLRPSRELGAVIVRTHCVNIGTQKQGDSARSEQSSNVTAILPAAVHGL PEKGGPWPLIQRWRSGGSCDCGGWDVGCGLCVLSAAVQVSSNGFQLFAEGGGSKEGKPVFVMRPAEKGMYSIEFNRRMSLVQAFFISVTVIHSQKPSDLV DLTMEKVFLDTDEPARKMIARDIGATTKFAPSPPLSPVGRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01030			Protein of unknown function (D...		Lus10021110 [exp]	0	1
AT5G08740		NDC1	NAD(P)H dehydrogenase C1 (.1)		Lus10014555 [exp]	1.7	0.8885
AT4G30950		FADC, SFD4, FAD...	STEAROYL DESATURASE DEFICIENCY...		Lus10036613 [exp]	4.0	0.8808
AT1G52190			Major facilitator superfamily ...		Lus10038618 [exp]	5.5	0.8569
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10024971 [exp]	6.2	0.8742
AT2G28900		OEP16, ATOEP16-...	outer envelope protein 16, OUT...		Lus10040810 [exp]	7.2	0.8549
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Lus10001921 [exp]	7.4	0.8644
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10014039 [exp]	8.9	0.8577
AT3G59760		ATCS-C, OASC	ARABIDOPSIS THALIANA CYSTEINSY...		Lus10027056 [exp]	11.0	0.8551
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10032688 [exp]	13.1	0.8731
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10002773 [exp]	14.7	0.8277

Compare expression of checked genes

Lus10021110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.