Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54020 445 / 6e-159 AtIPCS1 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) AT2G37940 444 / 1e-158 ERH1, AtIPCS2 enhancing RPW8-mediated HR-like cell death 1, Arabidopsis Inositol phosphorylceramide synthase 2 (.1) AT2G29525 377 / 2e-132 AtIPCS3 Arabidopsis Inositol phosphorylceramide synthase 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017199 [exp] 597 / 0 AT3G54020 462 / 7e-166 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Lus10027742 [exp] 518 / 0 AT3G54020 477 / 6e-171 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Lus10035551 [exp] 518 / 0 AT3G54020 490 / 2e-176 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Lus10040720 [exp] 373 / 3e-129 AT2G29525 399 / 6e-140 Arabidopsis Inositol phosphorylceramide synthase 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G105700 [exp] 471 / 8e-169 AT3G54020 493 / 1e-177 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Potri.006G093800 [exp] 470 / 1e-168 AT2G37940 490 / 2e-176 enhancing RPW8-mediated HR-like cell death 1, Arabidopsis Inositol phosphorylceramide synthase 2 (.1) Potri.001G246300 [exp] 364 / 3e-126 AT3G54020 374 / 2e-130 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Potri.005G193300 [exp] 41 / 0.001 AT1G43580 592 / 0.0 Sphingomyelin synthetase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021111 pacid=23182356 polypeptide=Lus10021111 locus=Lus10021111.g ID=Lus10021111.BGIv1.0 annot-version=v1.0 ATGACGCTTTACATTGGCCGGGAAGCTTCAAAGCTATGGAAGAGAGTTTGTGCAGAAACAACTACGGAGATCATTCTTCTCGTCGAGAACTGGAGATACA TTCTTGCCGGCTTGATTTGTCAGTATATTCATGGCTTGGCTGCTAGGGGAGTCCATTATTTCCACAGACCAGGACCGGTGTTGCAAGATGCCGGTTTCTA TCTACTTCCGGAGCTTGGACAAGATAAAGGTCACATTAGTGAAATGTTGTTCAGCTGTGTCTTTCTATCATTTGTGTTGTGGACATTCCATCCTTTCATC TTCAAGGTGAAGAAGGTGTACACAGTCCATTTGTGGTGCAGAGTTCTTGCATTTCTAGTAGCGTCTCAATTTCTCCGGATCATCACGTTTTACTCTACAC AACTTCCAGGTCCTAATTACCACTGCCGAGAGGGCTCGAAATTTGCAAGACTACCACGTCCACAGAGTGTGCTTGAAGTATTCGTGATTAGCTCTCGGGG CATTATGTTTGGTTGCGGTGATCTGATCTTCTCGTCACACATGATCTTCACTTTGGTATTTGTCCGTACATATCACAAGTATGGATCACAAAGATGCATC AAGCAGTTAGGATGGCTAGTTGCTGTGATCCAGAGCCTTTTGATCATTGCATCCAGGAAGCACTACACAGTCGATGTCGTTGTCGCATGGTACACTGTTA ATTTGGTGGTGTTCTTTATAGACAATAAATTACCTGAACTACCTGACCGGAACGGTGGAGCTGCTGCCTTGTTGCTACCAATAACTACCAAAGACAAAGA TGAAAAGACCAAAGAAGAGAATCACAAGCTCTTGAATGGCAACTCAGTAGACGATTGGAAGATCATGGACGATACAAACGGCATCCCCCATACGAATGCG ATGAACGGTGCTTAG
AA sequence Show only first row Show all	>Lus10021111 pacid=23182356 polypeptide=Lus10021111 locus=Lus10021111.g ID=Lus10021111.BGIv1.0 annot-version=v1.0 MTLYIGREASKLWKRVCAETTTEIILLVENWRYILAGLICQYIHGLAARGVHYFHRPGPVLQDAGFYLLPELGQDKGHISEMLFSCVFLSFVLWTFHPFI FKVKKVYTVHLWCRVLAFLVASQFLRIITFYSTQLPGPNYHCREGSKFARLPRPQSVLEVFVISSRGIMFGCGDLIFSSHMIFTLVFVRTYHKYGSQRCI KQLGWLVAVIQSLLIIASRKHYTVDVVVAWYTVNLVVFFIDNKLPELPDRNGGAAALLLPITTKDKDEKTKEENHKLLNGNSVDDWKIMDDTNGIPHTNA MNGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10021111 [exp]	0	1
AT2G47800		EST3, ATMRP4, A...	ATP-binding cassette C4, multi...		Lus10011498 [exp]	1.4	0.9132
AT2G22480		PFK5	phosphofructokinase 5 (.1)		Lus10012738 [exp]	2.0	0.9155
AT3G62700		ATMRP10, ABCC14	ATP-binding cassette C14, mult...		Lus10023139 [exp]	5.1	0.8674
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Lus10008423 [exp]	8.4	0.8876
AT1G27340			Galactose oxidase/kelch repeat...		Lus10037030 [exp]	15.2	0.8905
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Lus10020150 [exp]	23.5	0.8849
AT4G25390			Protein kinase superfamily pro...		Lus10031679 [exp]	29.2	0.7921
AT5G13550		SULTR4;1	sulfate transporter 4.1 (.1)		Lus10030321 [exp]	34.3	0.8873
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10004120 [exp]	34.6	0.8889
AT4G27730		ATOPT6	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022372 [exp]	37.6	0.8665

Compare expression of checked genes

Lus10021111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.