Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05830 159 / 1e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G01070 145 / 4e-44 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT2G37950 136 / 1e-40 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G59000 110 / 4e-30 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G34200 68 / 3e-14 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G60580 61 / 3e-11 RING/U-box superfamily protein (.1.2.3.4) AT2G45530 57 / 4e-10 RING/U-box superfamily protein (.1) AT5G03180 56 / 3e-09 RING/U-box superfamily protein (.1.2) AT3G06330 54 / 7e-09 RING/U-box superfamily protein (.1.2.3) AT3G09760 53 / 3e-08 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017197 [exp] 270 / 1e-92 AT5G05830 182 / 1e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040240 [exp] 170 / 1e-53 AT5G05830 187 / 4e-60 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10028249 [exp] 167 / 3e-52 AT5G05830 184 / 8e-59 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10035549 [exp] 165 / 2e-51 AT5G05830 157 / 4e-48 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10027744 [exp] 163 / 1e-50 AT5G05830 162 / 8e-50 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040716 [exp] 133 / 2e-39 AT5G05830 159 / 1e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10016451 [exp] 131 / 1e-38 AT5G05830 164 / 1e-51 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10007293 [exp] 96 / 3e-24 AT2G34200 103 / 6e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10029242 [exp] 95 / 4e-24 AT5G05830 101 / 3e-26 RING/FYVE/PHD zinc finger superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G094000 [exp] 174 / 5e-55 AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.010G195100 [exp] 172 / 1e-54 AT5G05830 206 / 9e-68 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.016G105900 [exp] 172 / 3e-54 AT5G05830 191 / 2e-61 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G062600 [exp] 167 / 7e-53 AT5G05830 211 / 7e-70 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.009G039700 [exp] 130 / 1e-38 AT5G05830 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G246700 [exp] 128 / 8e-38 AT5G59000 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.004G059200 [exp] 91 / 6e-22 AT5G05830 107 / 3e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G068800 [exp] 83 / 5e-19 AT5G05830 91 / 4e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G024000 [exp] 64 / 4e-12 AT5G60580 361 / 4e-120 RING/U-box superfamily protein (.1.2.3.4) Potri.016G022900 [exp] 62 / 2e-11 AT5G60580 337 / 7e-111 RING/U-box superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10021113 pacid=23182362 polypeptide=Lus10021113 locus=Lus10021113.g ID=Lus10021113.BGIv1.0 annot-version=v1.0 ATGTCAGTCATCGAAATGTCCCACCACCTCGATTTAGAGCAACAATTCCACCTCTACCACCACCGCTGCTGCGGGGACGAATGCGAGCCGGTGGAGGCGG TGAAGGTAAATTATTTGGGTTGTAATAAATCGGAAGAGAAAGATTGTAGGATTTGCCATCTGGGTTTGGAGAGCAACATCCACGAATCCGGAATTCCGAT TGAGCTGGGTTGCTCCTGCAAGAACGATTTGGCGGCTTCTCATAAACAGTGCGCCGAGACTTGGTTCAAGATCAAGGGAAATAAGACTTGTGAGATCTGT AACTCCATTGCTAGGAACGTTGCGGGAGTAACCGAGGCCGAAACAGTAGTACTGGTTGAACAATCGATCGACTCGAGCAATAACAACAACAACAACAATG CATTGGTAACGACTGTGGCTGCTGTAGCGTCGTCGCAACATTCGGAGGCGAATCATAACTTTTGGCAAGGGCATCGGTTCCTGAATTTCCTGCTTGGTTG TATGGTGTTTGCATTTGTCATCTCCTGGCTTTTCCACTTCAATGGGCCTTCTTCATAG
AA sequence Show only first row Show all	>Lus10021113 pacid=23182362 polypeptide=Lus10021113 locus=Lus10021113.g ID=Lus10021113.BGIv1.0 annot-version=v1.0 MSVIEMSHHLDLEQQFHLYHHRCCGDECEPVEAVKVNYLGCNKSEEKDCRICHLGLESNIHESGIPIELGCSCKNDLAASHKQCAETWFKIKGNKTCEIC NSIARNVAGVTEAETVVLVEQSIDSSNNNNNNNALVTTVAAVASSQHSEANHNFWQGHRFLNFLLGCMVFAFVISWLFHFNGPSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10021113 [exp]	0	1
AT1G09815		POLD4	polymerase delta 4 (.1)		Lus10024978 [exp]	1.7	0.8533
AT2G28310			Protein of unknown function (D...		Lus10016095 [exp]	1.7	0.7813
AT2G01275			RING/FYVE/PHD zinc finger supe...		Lus10004058 [exp]	2.4	0.7671
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10026118 [exp]	6.3	0.7385
AT3G22810			Plant protein of unknown funct...		Lus10009509 [exp]	9.9	0.8084
AT5G02440			unknown protein		Lus10023770 [exp]	10.9	0.7667
AT3G17900			unknown protein		Lus10013273 [exp]	12.8	0.7782
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10029125 [exp]	16.4	0.7772
AT1G69580	GARP		Homeodomain-like superfamily p...		Lus10037169 [exp]	19.9	0.7373
					Lus10002061 [exp]	21.5	0.7440

Compare expression of checked genes

Lus10021113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.