Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54040 182 / 6e-59 PAR1 protein (.1) AT5G52390 155 / 5e-48 PAR1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017196 [exp] 318 / 7e-113 AT3G54040 191 / 1e-62 PAR1 protein (.1) Lus10033988 [exp] 151 / 1e-45 AT5G52390 194 / 3e-62 PAR1 protein (.1) Lus10012788 [exp] 150 / 1e-45 AT5G52390 198 / 7e-64 PAR1 protein (.1) Lus10040714 [exp] 137 / 8e-41 AT5G52390 136 / 2e-40 PAR1 protein (.1) Lus10040715 [exp] 135 / 2e-40 AT5G52390 138 / 4e-41 PAR1 protein (.1) Lus10040702 [exp] 133 / 1e-39 AT5G52390 138 / 2e-41 PAR1 protein (.1) Lus10016450 [exp] 137 / 3e-39 AT5G52390 137 / 6e-39 PAR1 protein (.1) Lus10018204 [exp] 81 / 8e-20 AT5G52390 85 / 2e-21 PAR1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G106800 [exp] 231 / 4e-78 AT3G54040 191 / 1e-62 PAR1 protein (.1) Potri.006G094300 [exp] 225 / 5e-76 AT3G54040 198 / 2e-65 PAR1 protein (.1) Potri.015G144800 [exp] 166 / 1e-52 AT5G52390 208 / 5e-69 PAR1 protein (.1) Potri.012G141800 [exp] 162 / 3e-51 AT5G52390 213 / 6e-71 PAR1 protein (.1) Potri.009G039950 [exp] 152 / 5e-47 AT3G54040 140 / 1e-42 PAR1 protein (.1) Potri.009G040000 [exp] 152 / 1e-46 AT5G52390 141 / 3e-42 PAR1 protein (.1) Potri.009G039900 [exp] 131 / 4e-39 AT3G54040 118 / 4e-34 PAR1 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06521 [flax] [poplar] PAR1 PAR1 protein
Representative CDS sequence Show only first row Show all	>Lus10021114 pacid=23182412 polypeptide=Lus10021114 locus=Lus10021114.g ID=Lus10021114.BGIv1.0 annot-version=v1.0 ATGGCGGCCATCTTCAAATTCGCCGTAGCTATTTCCCTCTCTTCTCTCCTCCTCCATTCATCTCTAGCGTCGGAGATTGTGTGCGAGGAGCTGAGCAAGG ATGTGTGCGCATTCTCGATCTCGTCGTCGGGCAAGAGATGTGTGCTGGAGACCTACTCGGCGCCGAGGGACAGCGACATGGTGGAGTTACAGTGCCGGAC GTCGGAGATCGTGGTGGAGAGGATTGCCGGCCACATCGAGACCGACGAGTGCGTCAACTCCTGTGGAGTCGATAGGAGCTCTGTCGGTATCTCGTCGGAC TCGCTCATGGAGACTCAGTTCACTGCCAAGCTTTGCTCCCCGGCGTGTTACTCCAAGTGCCCAAACATCGTTGATCTGTACTTCAATCTGGCCGCCGGTG AAGGTGCATTTTTGCCGGACATCTGCACGGCGTCTCAAAGCAACCCACATCGATCAATGATCCAGCTGATGAGCTCCGGTTCCGCCGCTTTTGCTCCCAT CGCATCCGATGATCTCACCCTTGCTATGGCTCCAAGTCCCATGTAA
AA sequence Show only first row Show all	>Lus10021114 pacid=23182412 polypeptide=Lus10021114 locus=Lus10021114.g ID=Lus10021114.BGIv1.0 annot-version=v1.0 MAAIFKFAVAISLSSLLLHSSLASEIVCEELSKDVCAFSISSSGKRCVLETYSAPRDSDMVELQCRTSEIVVERIAGHIETDECVNSCGVDRSSVGISSD SLMETQFTAKLCSPACYSKCPNIVDLYFNLAAGEGAFLPDICTASQSNPHRSMIQLMSSGSAAFAPIASDDLTLAMAPSPM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54040			PAR1 protein (.1)		Lus10021114 [exp]	0	1
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10008598 [exp]	4.2	0.7212
AT3G52760			Integral membrane Yip1 family ...		Lus10022723 [exp]	7.7	0.6952
AT1G04260		PRA1.D, MPIP7, ...	PRENYLATED RAB ACCEPTOR 1.D, C...		Lus10042216 [exp]	8.7	0.6938
AT3G54040			PAR1 protein (.1)		Lus10017196 [exp]	9.6	0.7027
AT2G36430			Plant protein of unknown funct...		Lus10027720 [exp]	18.7	0.6802
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Lus10031096 [exp]	20.7	0.6569
AT1G28600			GDSL-like Lipase/Acylhydrolase...		Lus10011338 [exp]	22.6	0.6681
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Lus10016739 [exp]	30.2	0.6716
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Lus10026695 [exp]	32.6	0.6668
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Lus10019688 [exp]	37.0	0.6552

Compare expression of checked genes

Lus10021114 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.