Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54050 610 / 0 HCEF1 high cyclic electron flow 1 (.1.2) AT1G43670 320 / 2e-107 FINS1, AtcFBP FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) AT5G64380 275 / 1e-88 Inositol monophosphatase family protein (.1) AT3G55800 91 / 9e-20 SBPASE sedoheptulose-bisphosphatase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027748 [exp] 654 / 0 AT3G54050 655 / 0.0 high cyclic electron flow 1 (.1.2) Lus10035545 [exp] 654 / 0 AT3G54050 655 / 0.0 high cyclic electron flow 1 (.1.2) Lus10017195 [exp] 652 / 0 AT3G54050 601 / 0.0 high cyclic electron flow 1 (.1.2) Lus10018885 [exp] 324 / 1e-108 AT1G43670 620 / 0.0 FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) Lus10028580 [exp] 322 / 9e-108 AT1G43670 618 / 0.0 FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) Lus10007061 [exp] 271 / 4e-87 AT5G64380 549 / 0.0 Inositol monophosphatase family protein (.1) Lus10020433 [exp] 254 / 8e-81 AT5G64380 528 / 0.0 Inositol monophosphatase family protein (.1) Lus10028261 [exp] 89 / 6e-19 AT3G55800 611 / 0.0 sedoheptulose-bisphosphatase (.1) Lus10040228 [exp] 88 / 8e-19 AT3G55800 611 / 0.0 sedoheptulose-bisphosphatase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G106900 [exp] 625 / 0 AT3G54050 619 / 0.0 high cyclic electron flow 1 (.1.2) Potri.016G109000 [exp] 498 / 4e-176 AT3G54050 526 / 0.0 high cyclic electron flow 1 (.1.2) Potri.005G191400 [exp] 325 / 3e-109 AT1G43670 609 / 0.0 FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) Potri.002G069000 [exp] 318 / 2e-106 AT1G43670 619 / 0.0 FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) Potri.017G042900 [exp] 270 / 4e-87 AT5G64380 552 / 0.0 Inositol monophosphatase family protein (.1) Potri.008G063800 [exp] 90 / 2e-19 AT3G55800 629 / 0.0 sedoheptulose-bisphosphatase (.1) Potri.010G193300 [exp] 89 / 3e-19 AT3G55800 625 / 0.0 sedoheptulose-bisphosphatase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0171 [flax] [poplar] Phospoesterase PF00316 [flax] [poplar] FBPase Fructose-1-6-bisphosphatase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10021115 pacid=23182316 polypeptide=Lus10021115 locus=Lus10021115.g ID=Lus10021115.BGIv1.0 annot-version=v1.0 ATGGCGGCCGCAGCAGGAGCTGCTCATCTTCTATCCTCCTCCTCAACTCCACGCTCTCTTTCCCGCCTCTCTCCTTTCCACGTCTGTGTCTTCGACTCCA AATCCCTCGTTTTTTCCTCTTCTTCTTTCGGCCGGAGGAGGAACAACGTCGCCGCCGGCGGATCTGGTTTCAGATGCTCCGCCGTCGGGACTGCGCCGTC ATCGTCAACGACGACGACTAAGAAGAGGAGCAGCTACGAGATTCAGACACTGACGACCTGGCTTCTACAGCAGGAGCAGGCTGGAGTGATCGACGCCGAG CTCACGATTGTGCTCTCTAGCATCTCCACGGCGTGTAAGCAGATCGCCTCTCTAGTTCAGCGATCCGGGATTTCTAACCTCACCGGCGTCCAGGGCGCCG TCAATGTTCAGGGCGAGGATCAGAAGAAGCTCGACGTCGTTTCGAACGAGGTGTTTTCAAATTGCTTGAGGTCTAGCGGCAGGACGGGAATCATAGCATC GGAGGAAGAAGACGTTCCGGTCGCCGTGGAGGAAAGTTACTCCGGGAACTACATAGTGGTGTTCGATCCACTCGATGGATCCTCCAACATCGACGCCGCT GTCTCCACTGGCTCGATCTTCGGAATCTACAGTCCCAACGATGAGTGCCTCGCCGACATCGGAGACGGAGACGAATCAAATCTAGATACACAGGAGCAGA AGTGTGTGGTGAGCGTGTGCCAGCCGGGGAGCAACCTGCTCGCCGCCGGCTACTGCATGTACTCCAGCTCGGTGATCTTCGTCCTCACGATCGGAAACGG TGTTTTCGCCTTCAATCTGGACCCAATGTACGGCGAATTAGTGTTGACTCAAGAAAACATTCAGATCCCGAAAGCGGGAAAGATTTACTCGTTCAACGAA GGGAACTACCAAATGTGGGATGAGAAATTGAAGAAGTACATCGACGACCTCAAGGATCCTGGTCCCAGCGGGAAGCCTTACTCCGCTCGCTACATCGGAA GCTTGGTCGGGGACTTCCACCGGACGTTGCTCTGCGGTGGGATTTACGGGTACCCGAGGGATATGAAGAGCAAGAACGGGAAATTGAGGCTGCTGTATGA ATGTGCGCCGATGAGCTTTATTGTGGAGCAGGCTGGTGGGAAAGGATCGGATGGCCATGGGAGGATTCTTGACATCCAACCAGTTGAGATTCATCAGCGT GTGCCACTGTACATTGGAAGCGTGGAGGAAGTGGAGAAGCTGGAGAAGTATTTCGCTTGA
AA sequence Show only first row Show all	>Lus10021115 pacid=23182316 polypeptide=Lus10021115 locus=Lus10021115.g ID=Lus10021115.BGIv1.0 annot-version=v1.0 MAAAAGAAHLLSSSSTPRSLSRLSPFHVCVFDSKSLVFSSSSFGRRRNNVAAGGSGFRCSAVGTAPSSSTTTTKKRSSYEIQTLTTWLLQQEQAGVIDAE LTIVLSSISTACKQIASLVQRSGISNLTGVQGAVNVQGEDQKKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAA VSTGSIFGIYSPNDECLADIGDGDESNLDTQEQKCVVSVCQPGSNLLAAGYCMYSSSVIFVLTIGNGVFAFNLDPMYGELVLTQENIQIPKAGKIYSFNE GNYQMWDEKLKKYIDDLKDPGPSGKPYSARYIGSLVGDFHRTLLCGGIYGYPRDMKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHGRILDIQPVEIHQR VPLYIGSVEEVEKLEKYFA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Lus10021115 [exp]	0	1
AT1G71500			Rieske (2Fe-2S) domain-contain...		Lus10001278 [exp]	1.7	0.9758
AT1G71500			Rieske (2Fe-2S) domain-contain...		Lus10009471 [exp]	2.4	0.9695
AT1G09340		CSP41B, CRB, HI...	heteroglycan-interacting prote...		Lus10001525 [exp]	2.4	0.9707
AT1G06690			NAD(P)-linked oxidoreductase s...		Lus10016327 [exp]	3.5	0.9624
AT1G32080		AtLrgB	membrane protein, putative (.1...		Lus10010412 [exp]	3.5	0.9688
AT1G09340		CSP41B, CRB, HI...	heteroglycan-interacting prote...		Lus10031435 [exp]	4.5	0.9630
AT5G38410			Ribulose bisphosphate carboxyl...		Lus10017597 [exp]	5.2	0.9593
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Lus10001054 [exp]	5.3	0.9618
AT4G35250			NAD(P)-binding Rossmann-fold s...		Lus10022632 [exp]	5.7	0.9613
AT5G13720			Uncharacterised protein family...		Lus10029480 [exp]	5.9	0.9393

Compare expression of checked genes

Lus10021115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.