Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37960 228 / 5e-69 unknown protein AT3G54060 203 / 5e-60 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035544 [exp] 194 / 1e-57 AT2G37960 151 / 6e-42 unknown protein Lus10027749 [exp] 170 / 7e-48 AT2G37960 234 / 2e-72 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G109100 [exp] 327 / 1e-106 AT2G37960 305 / 2e-98 unknown protein Potri.006G094600 [exp] 325 / 7e-106 AT2G37960 322 / 9e-105 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021116 pacid=23182306 polypeptide=Lus10021116 locus=Lus10021116.g ID=Lus10021116.BGIv1.0 annot-version=v1.0 ATGGGGAAGCAATCCCGATCCAAGAAGACCGACGTAGTAGGCAAAGGCCCGGTGACGCCGATCCAGATCGCCTACATCGTCGACCAATATCTCTGCGACA ACAATCTCTCCGAGACTCGTGCCGTCTTCAGGAACGAAGCTTCTTCGCTAATTTCGAAATCGCCGGAGCCTCCGAAGAGTTTGATGAGCTTAGGGACGAT TCTGGAGGAATACATTAGCTTGAAGTCGCAGAAGATGCTACTGGATCAAGAAACTTTCCGTTTGGAGCAGGAGAAAACTAGAGTTGAGAATCTACTGTAC GGTATGCAAGATGTGATGAACGTTTACAACTCTACTAGCTCTGTTCCTTCTTCAATTCCCATGGTCCAATCAGCAATTCGTCAACCTCCACCAGTTGCTG GCTGTAGGGTGTATAAATCATCAGGTGTAGTTCATTTTCCTGTGACTACCAATGCTAAGCATACTACACCGGTTTCGAATCTTCCATTGACGAGAAAGAG AGTTGGTTCAGTTTTGCCTTCTGCACCTAAGAAGTCCAAGTTACTCCCTCTAACCACACCAAGTCCTGCAACATGTAATGCACCATCCACTGATATGGAA GCTGGTCAGTGTTCTTCTTCTGTGGTTAGATCATCGTTGCCTAACAACTGCTTGCCTGGTGGTGCTCAAGTTCCAAACGGATCAAATGTAGTCAAGAGTT TGTTCAATCAAGCTCGGTCTTCTTCATCACCCCCTCTGCCGAACTCCTCTAGTCCTGTAACACCTCCACAATCTACATCCTCTCCGAACAGTAAGTCTGG AACTCCCAATGGTGTGACTCCAGAAAACATAACTCCAACTAGTTGCACCGTGATTACTTCTGAGAGGCTTGTTGTTAGCCCGTGCAAACACATTGCATAC ACAGTGGAGAGAAACTGTTGCGTTTCATCATCATCTCCTTCGTCCCTGAAACCCAGTCCCACCAAAAGGTCTGGAAAGCGAGATTGCGTGAAGGGCAGGC TGGACTTTGGTGGGTCTTCGGATGAGAAGACTGTAATTACGAATGAGCAGCAGCCTGGAGTTAATGAGACTTCTACACCGGAGTCTGAGAAGGATGAAGA AGACATCTTCTGCCTGGATTTGCCAAGCATGTTTGGACCAAACTTCTCCTTCAATGAGTTGCTCAACGATCTAGATCTTGACTGCCCTTGCGAACAACCT TCTGGCGCTTCTACAGATTCTGGTTCTGGGACATCACAAGATGGCAACCCAGTTACAGATCACGTTCTATCTGAGTTCTCCTCAACTGTGACACAGGTGG TTTCTGGAAATGATAGGCAAATACAAGGTTCCTCTGATGCTCCAAGTACTGTGACCTCCATAACCAAATCAATAAGGATCTTTAGCCCTGCAAAAGGTCT AGTGGGATCTCCAGAGCATCAGGAATAG
AA sequence Show only first row Show all	>Lus10021116 pacid=23182306 polypeptide=Lus10021116 locus=Lus10021116.g ID=Lus10021116.BGIv1.0 annot-version=v1.0 MGKQSRSKKTDVVGKGPVTPIQIAYIVDQYLCDNNLSETRAVFRNEASSLISKSPEPPKSLMSLGTILEEYISLKSQKMLLDQETFRLEQEKTRVENLLY GMQDVMNVYNSTSSVPSSIPMVQSAIRQPPPVAGCRVYKSSGVVHFPVTTNAKHTTPVSNLPLTRKRVGSVLPSAPKKSKLLPLTTPSPATCNAPSTDME AGQCSSSVVRSSLPNNCLPGGAQVPNGSNVVKSLFNQARSSSSPPLPNSSSPVTPPQSTSSPNSKSGTPNGVTPENITPTSCTVITSERLVVSPCKHIAY TVERNCCVSSSSPSSLKPSPTKRSGKRDCVKGRLDFGGSSDEKTVITNEQQPGVNETSTPESEKDEEDIFCLDLPSMFGPNFSFNELLNDLDLDCPCEQP SGASTDSGSGTSQDGNPVTDHVLSEFSSTVTQVVSGNDRQIQGSSDAPSTVTSITKSIRIFSPAKGLVGSPEHQE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37960			unknown protein		Lus10021116 [exp]	0	1
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Lus10024822 [exp]	1.0	0.9779
AT3G56370			Leucine-rich repeat protein ki...		Lus10025223 [exp]	2.2	0.9620
AT4G35930			F-box family protein (.1)		Lus10041876 [exp]	2.8	0.9634
AT5G02370			ATP binding microtubule motor ...		Lus10024395 [exp]	2.8	0.9676
AT3G02820			zinc knuckle (CCHC-type) famil...		Lus10030564 [exp]	3.7	0.9509
AT1G16070	TUB	AtTLP8	tubby like protein 8 (.1.2)		Lus10041617 [exp]	3.9	0.9652
AT3G06868			unknown protein		Lus10024784 [exp]	4.2	0.9578
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10043126 [exp]	6.9	0.9590
AT5G26850			Uncharacterized protein (.1.2....		Lus10029842 [exp]	7.3	0.9494
AT5G67270		ATEB1C, ATEB1H1	ATEB1-HOMOLOG1, MICROTUBULE EN...		Lus10011508 [exp]	7.9	0.9613

Compare expression of checked genes

Lus10021116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.