Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01090 182 / 4e-54 Concanavalin A-like lectin family protein (.1) AT3G09190 143 / 1e-39 Concanavalin A-like lectin family protein (.1) AT3G09035 135 / 2e-36 Concanavalin A-like lectin family protein (.1) AT3G54080 102 / 3e-24 Concanavalin A-like lectin family protein (.1) AT3G53380 84 / 2e-17 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 81 / 3e-16 Concanavalin A-like lectin protein kinase family protein (.1) AT2G29220 79 / 7e-16 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 78 / 2e-15 Concanavalin A-like lectin protein kinase family protein (.1) AT2G29250 77 / 4e-15 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45390 75 / 2e-14 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017194 [exp] 553 / 0 AT5G01090 219 / 3e-68 Concanavalin A-like lectin family protein (.1) Lus10027751 [exp] 262 / 8e-85 AT5G01090 166 / 6e-48 Concanavalin A-like lectin family protein (.1) Lus10035542 [exp] 260 / 3e-84 AT5G01090 175 / 1e-51 Concanavalin A-like lectin family protein (.1) Lus10016507 [exp] 85 / 1e-17 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 83 / 4e-17 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 83 / 6e-17 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001562 [exp] 82 / 7e-17 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10022662 [exp] 80 / 5e-16 AT5G01550 651 / 0.0 lectin receptor kinase a4.1 (.1) Lus10040276 [exp] 78 / 2e-15 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G094900 [exp] 317 / 1e-106 AT5G01090 265 / 2e-86 Concanavalin A-like lectin family protein (.1) Potri.016G107200 [exp] 310 / 4e-104 AT5G01090 230 / 9e-73 Concanavalin A-like lectin family protein (.1) Potri.010G194700 [exp] 149 / 1e-41 AT5G01090 117 / 5e-30 Concanavalin A-like lectin family protein (.1) Potri.010G200600 [exp] 92 / 5e-20 AT3G55550 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G130000 [exp] 80 / 6e-16 AT3G53380 866 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G087800 [exp] 77 / 3e-15 AT3G53380 881 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036300 [exp] 77 / 5e-15 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.008G058400 [exp] 77 / 6e-15 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G101000 [exp] 76 / 7e-15 AT3G55550 704 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035601 [exp] 76 / 1e-14 AT3G45430 498 / 3e-169 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10021117 pacid=23182407 polypeptide=Lus10021117 locus=Lus10021117.g ID=Lus10021117.BGIv1.0 annot-version=v1.0 ATGGCCATTCCCTCTGCCTTCCTAGCTTTTTCACTGTTTTGCCACTTCAATCTGCTCCTTGCAGATCCCAGTGGCAGTAATCCTTCATTTTCCTTCCACA AATTTGACAAAGATCCAAACTTTGATTCAACATTATCCCTCTACGGCGATGCAAAGCTCGTCGGCCTTAACGGGTCATCATCCATCCAGCTGACTCACTC CGTCAGTTCAAGCGGCGGCAGAGTCATGTACAAGAAACCAATCAAGCTCAAAAACAGCAACGGTTCATCCGCGGCTTCTTTCTCAACTTACTTCTCTTTC CTCATCTCCCCGGACAACGGCGGCGACGGTCTGGCTTTGGTCATGGTCCCCGCCGTCGAATTCAACGCTACTCTGTTCGTAAAGAACAGTCCCTTCGGGC TTTCTCTCCGGTCAACGGGGAAAAACCGGTCCAGAATCGTGGCGGTTGAATACGGCGCGTTGAAAGATGCAAAAAACGGATCTTTGAATGACGACCATGT CGGAATAGACGTCGGCGGGTTCGTGTCGGTCAAGGTAAGAAATGTTTCTTCAATCAACGCATTGTTGAAGAGCGGGGTCAGATTGCATTCCTGGGTTGAC TATGAAGCTGGTTCCAAAAGGTTAGAAGTCAGATTGAGTCAATTCGGCGGCGGCAGGAGGAGAAAGCCCGTTGACCCGCTTCTTTCGTACCCGATTGACT TGTCGAAGATGTGGAATGACGAGGAGGTCCTCATAGGGTTGAGCTCCTCCAATGGCAATTCCTCCCAGAACTGCTTTCTCTACTCTTGGAGCTTCCAGCT GAGGCGGTTCCCTCGCTGGATGCATTCTCAGCCGTTGGATCTCAATCGGAAGGATTCAAGTTTGAAACCTGTGGTGGTGGTGAGCAGTGAGAAGAAGAGT GACTGTTTGTTGTGGGTGATTTCAGCTCTGGTTTTGGGAATTGGGTGTGGAGGGTTAGGAGCATTCATGGTGATGAAGCTTTGTGCCATGTTCGGGAAGA GGAATCCGGTGGCGCCGGAGGTTGTTGATCCGGTGGAATTTGATTATGAGAAGGTGAAAGTGATGGTGGTTTTGGATGATGATAAGGTTCTCAAAGATGG GAAGCAGTAG
AA sequence Show only first row Show all	>Lus10021117 pacid=23182407 polypeptide=Lus10021117 locus=Lus10021117.g ID=Lus10021117.BGIv1.0 annot-version=v1.0 MAIPSAFLAFSLFCHFNLLLADPSGSNPSFSFHKFDKDPNFDSTLSLYGDAKLVGLNGSSSIQLTHSVSSSGGRVMYKKPIKLKNSNGSSAASFSTYFSF LISPDNGGDGLALVMVPAVEFNATLFVKNSPFGLSLRSTGKNRSRIVAVEYGALKDAKNGSLNDDHVGIDVGGFVSVKVRNVSSINALLKSGVRLHSWVD YEAGSKRLEVRLSQFGGGRRRKPVDPLLSYPIDLSKMWNDEEVLIGLSSSNGNSSQNCFLYSWSFQLRRFPRWMHSQPLDLNRKDSSLKPVVVVSSEKKS DCLLWVISALVLGIGCGGLGAFMVMKLCAMFGKRNPVAPEVVDPVEFDYEKVKVMVVLDDDKVLKDGKQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01090			Concanavalin A-like lectin fam...		Lus10021117 [exp]	0	1
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Lus10008623 [exp]	2.0	0.8746
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Lus10022444 [exp]	2.4	0.8924
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10004302 [exp]	4.2	0.8771
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Lus10016750 [exp]	6.9	0.8665
AT4G35510			unknown protein		Lus10035988 [exp]	7.5	0.8393
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10018191 [exp]	9.5	0.8801
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10004301 [exp]	9.5	0.8719
AT4G14200			Pentatricopeptide repeat (PPR)...		Lus10041255 [exp]	11.5	0.8142
AT1G32580			plastid developmental protein ...		Lus10023744 [exp]	12.7	0.8624
AT4G21610		LOL2	lsd one like 2 (.1)		Lus10020766 [exp]	12.8	0.7935

Compare expression of checked genes

Lus10021117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.