Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54090 652 / 0 FLN1 fructokinase-like 1 (.1) AT1G69200 313 / 4e-100 FLN2 fructokinase-like 2 (.1) AT3G59480 193 / 2e-57 pfkB-like carbohydrate kinase family protein (.1) AT1G06020 192 / 8e-57 pfkB-like carbohydrate kinase family protein (.1) AT1G06030 191 / 1e-56 pfkB-like carbohydrate kinase family protein (.1) AT2G31390 186 / 8e-55 STH pfkB-like carbohydrate kinase family protein (.1) AT1G66430 186 / 6e-54 pfkB-like carbohydrate kinase family protein (.1) AT5G51830 181 / 2e-52 pfkB-like carbohydrate kinase family protein (.1) AT4G10260 176 / 5e-51 pfkB-like carbohydrate kinase family protein (.1) AT1G50390 61 / 8e-11 pfkB-like carbohydrate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017191 [exp] 934 / 0 AT3G54090 679 / 0.0 fructokinase-like 1 (.1) Lus10037064 [exp] 311 / 6e-100 AT1G69200 592 / 0.0 fructokinase-like 2 (.1) Lus10036920 [exp] 301 / 7e-97 AT1G69200 582 / 0.0 fructokinase-like 2 (.1) Lus10040562 [exp] 195 / 6e-58 AT4G10260 539 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10013611 [exp] 192 / 8e-57 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10026865 [exp] 190 / 6e-56 AT3G59480 560 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009526 [exp] 184 / 1e-53 AT2G31390 553 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028089 [exp] 179 / 2e-52 AT4G10260 452 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Lus10031668 [exp] 172 / 8e-49 AT5G51830 522 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G109600 [exp] 611 / 0 AT3G54090 630 / 0.0 fructokinase-like 1 (.1) Potri.008G097300 [exp] 342 / 3e-111 AT1G69200 598 / 0.0 fructokinase-like 2 (.1) Potri.012G132700 [exp] 189 / 2e-55 AT5G51830 460 / 1e-163 pfkB-like carbohydrate kinase family protein (.1) Potri.017G029000 [exp] 189 / 4e-55 AT3G59480 568 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.007G129700 [exp] 183 / 2e-53 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.019G063600 [exp] 182 / 6e-53 AT4G10260 550 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.015G134900 [exp] 182 / 7e-53 AT5G51830 456 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Potri.004G089300 [exp] 181 / 4e-52 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G126300 [exp] 170 / 8e-48 AT1G66430 519 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.002G042700 [exp] 44 / 0.0003 AT1G06730 546 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF00294 [flax] [poplar] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10021118 pacid=23182424 polypeptide=Lus10021118 locus=Lus10021118.g ID=Lus10021118.BGIv1.0 annot-version=v1.0 ATGGCTACATTTCTTCTATCTCGTTCCTTATTCTTAAACCCTACTTATCCTTCCACAGCTCCATCTCCAGGATTTGGAAAGAAACCTTTTTGTTTTGCTA AGATTCTGAGAATACCAAAAGCAACCATCAATGGCGACAACGGAGCTGCTGAAATCGAATCCTCCTCAAAGCCATCTCGCCGCGGCCGGAAAAAGAAGCC CACTTCGGAATCTTCTCCATCTCCTTCCGGCGACGTTCCACCGAAAAGACCGAGAGGGAGACCCAGGAAGGTAATCGTTGAAGACGATAACCAAGAGCAA GCCAAAGAGGGTCCATCACCGGAGCCTGTGGTAGAACGAGAAGTGGGCGATTTCGACGACGGAGTGGATCTCCCGTACGAGTCCCCGCCGTTAGTGTGCT GCTTCGGCTCTCCACACAAGGAATTCGTGCCTTCGGTGAGGGTGCACGACGATCCGATGCACCCGGACATGTACTCAGAGTGGAAGATGCTCCAGTGGGA CCCGCCGGACTTCGCCAGGGCTCCAGGTGGGCCGCCGTCGAACGTGGCGATCGCGCACGTGCGGCTCGGCGGCAGGGCGGCTTTTATGGGGAAAGTTGGG GATGATCCCCTTGGGGAGGAGATGGTGCTGATGATGAACAAGGAGAATGTCCAGACTCGAGCTGTGAAGTTCGATGAGAATTTCAAAACTGCTTGTACTT ATATGAAGGTTAAGTTTGAAGATGGGAAGTTGAAGATGGAGGCTTCCAAGGAAGCTGCAGAACACTCTCTTCTCACCTCTGAATTGAACCTCTCTGTACT CAAGGAGGCGAGGATGTTCCATTTCAATTCCGAAGTGCTGACGTCGCCATCGATGCGATCGACTCTATACAAAGCAATCGAATGGTCGAAACATTTCGGC AGCCTCATATTCTTCGATCCGAATCTGCCACTGCCACTATGGAAGAATCGCGACGAGACTCGTGAGCTGATCAAGAAAGCCTGGGAAGAAGCCGACATCA TCGAGGTCTCGAGGCAAGAGCTTGAGTTCCTCCTCGACGAAAGATACTACGAGTGGCTAAAAAACTACAAGCCACAGTACTACTCGGAGAGCTTCGAGCA ATCAAAGGGAAGGAGGAACCACCACCATTACTCCCCCGAGGAGTTAGCCCCACTGTGGCATGAAAAGCTCAAGTTCCTTTTTGTGACAGACGGAACGTTG CATATTCATTACTACACTCCGAATTTCCACGGTTCGGTAGTTGGGACGGAGGATACGCTCATAACTCCGTTTACGTGTGACAGAACGGGGTCCGGGGATG CAGTTGTGGCTGCTATAATGAGGAAGCTGACTACGTGTCCGGAGATGTACGAGGATCAGGATTTCTTGGAGAGACAGCTTCGGTTTGTTGTATCGGCCGG GATCATTTCGCAGTGGACAATTGGTGCTGTGAGAGGGTTTCCGACAGAGAATGCTGCTCAGAATCTTAAGGAACAGGTTTATGTTCCTTCCATGTGGTAG
AA sequence Show only first row Show all	>Lus10021118 pacid=23182424 polypeptide=Lus10021118 locus=Lus10021118.g ID=Lus10021118.BGIv1.0 annot-version=v1.0 MATFLLSRSLFLNPTYPSTAPSPGFGKKPFCFAKILRIPKATINGDNGAAEIESSSKPSRRGRKKKPTSESSPSPSGDVPPKRPRGRPRKVIVEDDNQEQ AKEGPSPEPVVEREVGDFDDGVDLPYESPPLVCCFGSPHKEFVPSVRVHDDPMHPDMYSEWKMLQWDPPDFARAPGGPPSNVAIAHVRLGGRAAFMGKVG DDPLGEEMVLMMNKENVQTRAVKFDENFKTACTYMKVKFEDGKLKMEASKEAAEHSLLTSELNLSVLKEARMFHFNSEVLTSPSMRSTLYKAIEWSKHFG SLIFFDPNLPLPLWKNRDETRELIKKAWEEADIIEVSRQELEFLLDERYYEWLKNYKPQYYSESFEQSKGRRNHHHYSPEELAPLWHEKLKFLFVTDGTL HIHYYTPNFHGSVVGTEDTLITPFTCDRTGSGDAVVAAIMRKLTTCPEMYEDQDFLERQLRFVVSAGIISQWTIGAVRGFPTENAAQNLKEQVYVPSMW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54090		FLN1	fructokinase-like 1 (.1)		Lus10021118 [exp]	0	1
AT4G02990		RUG2, BSM	RUGOSA 2, BELAYA SMERT, Mitoch...		Lus10014877 [exp]	1.0	0.9410
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10028683 [exp]	1.7	0.9386
AT1G06190			Rho termination factor (.1.2)		Lus10022920 [exp]	2.0	0.9408
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Lus10038140 [exp]	2.2	0.9372
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Lus10026460 [exp]	3.3	0.9208
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10027552 [exp]	4.4	0.9000
AT3G54090		FLN1	fructokinase-like 1 (.1)		Lus10017191 [exp]	4.9	0.9381
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10027366 [exp]	5.1	0.8966
AT1G06190			Rho termination factor (.1.2)		Lus10024898 [exp]	6.0	0.9251
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Lus10010686 [exp]	6.3	0.9259

Compare expression of checked genes

Lus10021118 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.