Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37980 754 / 0 O-fucosyltransferase family protein (.1) AT3G54100 746 / 0 O-fucosyltransferase family protein (.1) AT5G01100 645 / 0 O-fucosyltransferase family protein (.1) AT5G35570 576 / 0 O-fucosyltransferase family protein (.1) AT5G15740 398 / 3e-132 RRT1 O-fucosyltransferase family protein (.1) AT3G02250 397 / 9e-132 O-fucosyltransferase family protein (.1) AT1G14020 394 / 5e-131 O-fucosyltransferase family protein (.1) AT5G64600 394 / 9e-131 O-fucosyltransferase family protein (.1) AT1G22460 392 / 4e-129 O-fucosyltransferase family protein (.1) AT2G03280 375 / 1e-123 O-fucosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017190 [exp] 1147 / 0 AT2G37980 781 / 0.0 O-fucosyltransferase family protein (.1) Lus10035540 [exp] 976 / 0 AT3G54100 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10027753 [exp] 959 / 0 AT3G54100 744 / 0.0 O-fucosyltransferase family protein (.1) Lus10017171 [exp] 592 / 0 AT5G35570 828 / 0.0 O-fucosyltransferase family protein (.1) Lus10021557 [exp] 591 / 0 AT5G35570 807 / 0.0 O-fucosyltransferase family protein (.1) Lus10028253 [exp] 566 / 0 AT2G37980 577 / 0.0 O-fucosyltransferase family protein (.1) Lus10040236 [exp] 558 / 0 AT2G37980 573 / 0.0 O-fucosyltransferase family protein (.1) Lus10008719 [exp] 418 / 9e-140 AT1G22460 662 / 0.0 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 400 / 7e-133 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G109700 [exp] 774 / 0 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G095300 [exp] 758 / 0 AT2G37980 722 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G142400 [exp] 589 / 0 AT5G35570 843 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 416 / 3e-139 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 416 / 1e-138 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 410 / 6e-137 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 400 / 2e-133 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 398 / 4e-132 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 394 / 4e-131 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 393 / 2e-130 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10021119 pacid=23182360 polypeptide=Lus10021119 locus=Lus10021119.g ID=Lus10021119.BGIv1.0 annot-version=v1.0 ATGATGGCCATGTCGTCCGGTGGTAGCGCAGCAGCCTCCTCCACCAACGTCAGCCCCGGCCCAACCACCACGCGGCGGCGAGCGGATTCCCACGGAGTTG ACACCGAGGAAGCCGGAGGAGTAGGAGGATTAGGAGGAGGAGGAAACAACAACATCTCCGCTCTGCTTCCCAACACCACCCGGCACCCGGTGATCAGGTA CCTTCTTCTGCGGCGGAAGCTTTTCTTCTTCCTTCCCGAGGTCCTCCTGGTCGGGTTCGACGAAGGCTGCCAGCGCGCGGCGGCAATGGCGCAAGGGATG AGATCCGGGAAGAACAACGGGAGGAGGATTATCGGTGCCTTGATGTTTATGGCGGTTGTTTCGGTGTTTGTTAAGGTTTTTCTGTTGAGTCATCATTTTG ATTATCTCCTCCTCGAGAGTCAAAATCGTAGCAACGACGGCGGCGCTGGAGGCGGTGTTGATGCCGGTGGCGTTAAAGAGATGAACGGACTGCTGATTCT CCAGACTTTTAAGGACGATTGGGCCATGGCGCAACGAGTCCTCTCCGAAACTCAATCCTCCATTCCCAAACGCCTCCTCGAGAAATTCCCGACTCCAGAA ATTTGGATGAAGCCATACAGTGACAACATCTACAAGTGCATAACTAGGCCGAGAAAGCAATTAAAATCAAGGAAAACAAATGGGTACCTGCTTGTTCACG CCAATGGCGGGTTAAATCAGATGAGAACAGGGATTTGTGACATGGTTGCTGCTGCCAAGTTGATGAATGCAACTCTGGTTCTTCCTTCCCTTGACCATGA ATCGTTCTGGACTGATCCCAGTACGTTTAAGGATATATTTGACTGGAGGCACTTCATGAAAGTGTTGAAAGATGATGTTGAAATAGTTGAATACTTGCCA CCCCAGTTTGCAAGGAAGAAGCCTCTTGTCAAGGCTCCAATCTCTTGGTCCAAGGCTAGCTACTACAGAGGAGAGGCTATACTGTTGAAGAAGCACAAAG TTATCAAATACACTCACACCGACTCCAGACTGGCCAATAATGGCCTTGCATCTTCCATTCAGAAGCTCCGATGCCGAGCCAATTATGCAGCTCTCCGTTA CTCCCAAGAAATCGAGGATCTTGGCAGGATATTGGTGGCCCGGCTGAGAAAGAACAACGAGCCTTTTGTTGCTCTGCATCTAAGGTATGAGAAAGACATG CTATCTTTCACGGGATGCAACCACAACCTTACTTCACAGGAAGCCGAGGAGCTTCGAATAATGAGGTACGGAGTTCAGCACTGGAAGGAGAAAGAGATCG ACAGTGAAGCTAGAAGACAAGAAGGAGGGTGTCCCATGTCTCCCAGAGAAGCCGCCATGTTTCTCAAGGCCATGGGGTACCCTTCCTCCACGACCATCTA CATCGTTGCAGGACCGATCTACGGAGGCAATAGCATGGCAGCATTTCGAGAAGAGTATCCGAACGTGTTCACTCATTCTACTCTAGCAACTGAGGAAGAG CTGGAGCCGTTCAAGGCGTACCAGAATCGTCTGGCTGCTCTTGACTACATTGTGGCTCTGGAGAGTGATGTGTTTGTTTATACTTATGATGGCAATATGG CTAAGGCGGTGCAAGGTCATCGGCGGTTCGAAGGTTTCAGGAAGACCATCAACCCGGATAGGCAAAACTTCGTGGCGCTGATCGATCAGTTGGACGAGGG ATCCCTTTCGTTCGAAGAGTTCTCATCCCAGGTCAGAAGATTACACGCTCACAGAATCGGACAGGCCTATCTAAGGAGGGTAGGGGAATCACCAAGGCTG GAGGAGAACTTCTACGCAAACCCAATTCCAGGCTGCTTGTGCAACCGGACTCAGGAGCGGTTAAGTACTTTAGCAGCGATTGAACGGAGACGAGCCAATC TCGGAACCGCATCTCAGAGGTGA
AA sequence Show only first row Show all	>Lus10021119 pacid=23182360 polypeptide=Lus10021119 locus=Lus10021119.g ID=Lus10021119.BGIv1.0 annot-version=v1.0 MMAMSSGGSAAASSTNVSPGPTTTRRRADSHGVDTEEAGGVGGLGGGGNNNISALLPNTTRHPVIRYLLLRRKLFFFLPEVLLVGFDEGCQRAAAMAQGM RSGKNNGRRIIGALMFMAVVSVFVKVFLLSHHFDYLLLESQNRSNDGGAGGGVDAGGVKEMNGLLILQTFKDDWAMAQRVLSETQSSIPKRLLEKFPTPE IWMKPYSDNIYKCITRPRKQLKSRKTNGYLLVHANGGLNQMRTGICDMVAAAKLMNATLVLPSLDHESFWTDPSTFKDIFDWRHFMKVLKDDVEIVEYLP PQFARKKPLVKAPISWSKASYYRGEAILLKKHKVIKYTHTDSRLANNGLASSIQKLRCRANYAALRYSQEIEDLGRILVARLRKNNEPFVALHLRYEKDM LSFTGCNHNLTSQEAEELRIMRYGVQHWKEKEIDSEARRQEGGCPMSPREAAMFLKAMGYPSSTTIYIVAGPIYGGNSMAAFREEYPNVFTHSTLATEEE LEPFKAYQNRLAALDYIVALESDVFVYTYDGNMAKAVQGHRRFEGFRKTINPDRQNFVALIDQLDEGSLSFEEFSSQVRRLHAHRIGQAYLRRVGESPRL EENFYANPIPGCLCNRTQERLSTLAAIERRRANLGTASQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54100			O-fucosyltransferase family pr...		Lus10021119 [exp]	0	1
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10023857 [exp]	1.0	0.9702
AT2G37980			O-fucosyltransferase family pr...		Lus10017190 [exp]	1.4	0.9695
					Lus10006091 [exp]	1.7	0.9661
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10013039 [exp]	2.2	0.9633
AT5G38700			unknown protein		Lus10002433 [exp]	3.5	0.9640
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020331 [exp]	4.0	0.9541
AT3G19540			Protein of unknown function (D...		Lus10028070 [exp]	4.2	0.9589
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10016847 [exp]	4.6	0.9573
AT3G18710		ATPUB29	ARABIDOPSIS THALIANA PLANT U-B...		Lus10042798 [exp]	7.5	0.9369
AT2G41010		ATCAMBP25	calmodulin (CAM)-binding prote...		Lus10029339 [exp]	7.5	0.9392

Compare expression of checked genes

Lus10021119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.